Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   D1100_RS06495 Genome accession   NZ_CP031869
Coordinates   1417345..1417854 (-) Length   169 a.a.
NCBI ID   WP_005598178.1    Uniprot ID   A3N1L8
Organism   Actinobacillus pleuropneumoniae strain WF83     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1412345..1422854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1100_RS06475 (D1100_06515) tehA 1412811..1413761 (-) 951 WP_005617701.1 dicarboxylate transporter/tellurite-resistance protein TehA -
  D1100_RS06480 (D1100_06520) hxpB 1413857..1414507 (-) 651 WP_005598175.1 hexitol phosphatase HxpB -
  D1100_RS11120 (D1100_06525) - 1414685..1414732 (-) 48 Protein_1272 SEC-C metal-binding domain-containing protein -
  D1100_RS06485 (D1100_06530) - 1414745..1415308 (-) 564 WP_005604973.1 flavin reductase family protein -
  D1100_RS06490 (D1100_06535) - 1415395..1417239 (-) 1845 WP_237601094.1 ABC transporter ATP-binding protein -
  D1100_RS06495 (D1100_06540) luxS 1417345..1417854 (-) 510 WP_005598178.1 S-ribosylhomocysteine lyase Regulator
  D1100_RS06500 (D1100_06545) - 1417909..1420575 (-) 2667 WP_005617705.1 PqiB family protein -
  D1100_RS06505 (D1100_06550) fur 1420723..1421172 (-) 450 WP_005598183.1 ferric iron uptake transcriptional regulator -
  D1100_RS06510 (D1100_06555) fldA 1421201..1421725 (-) 525 WP_005598185.1 flavodoxin FldA -
  D1100_RS06515 (D1100_06560) ybfE 1421747..1422031 (-) 285 WP_005620439.1 LexA regulated protein -
  D1100_RS06520 (D1100_06565) ybaK 1422240..1422716 (-) 477 WP_005604978.1 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18869.63 Da        Isoelectric Point: 5.2621

>NTDB_id=272352 D1100_RS06495 WP_005598178.1 1417345..1417854(-) (luxS) [Actinobacillus pleuropneumoniae strain WF83]
MPLLDSFKVDHTRMNAPAVRVAKTMTTPKGDTITVFDLRFCRPNIDILPVRGIHTMEHLFAGFMRDHLNSESVEIIDISP
MGCRTGFYMSLIGAPSEADVVSAWTKSMEDALNKVPDVSKIPELNEYQCGSYKEHSLEEAHQIARDVLAKGIGVNRNEDL
ALDEKLLNP

Nucleotide


Download         Length: 510 bp        

>NTDB_id=272352 D1100_RS06495 WP_005598178.1 1417345..1417854(-) (luxS) [Actinobacillus pleuropneumoniae strain WF83]
ATGCCTTTATTAGATAGCTTTAAAGTGGATCACACTCGTATGAACGCACCGGCAGTGCGTGTTGCAAAAACGATGACGAC
GCCGAAGGGCGATACGATTACCGTATTCGATTTACGTTTTTGCCGTCCGAATATTGATATTTTACCGGTGCGTGGTATCC
ACACGATGGAACACTTATTTGCCGGCTTTATGCGTGATCATTTAAATAGTGAAAGTGTAGAAATTATTGATATTTCGCCG
ATGGGTTGCCGTACCGGTTTCTATATGTCGTTAATCGGTGCGCCAAGCGAAGCGGATGTGGTTTCGGCGTGGACAAAATC
GATGGAAGATGCTTTAAATAAAGTACCGGACGTGTCAAAAATTCCGGAATTAAACGAATATCAATGCGGCTCTTATAAAG
AGCATTCGCTTGAAGAAGCGCATCAAATCGCTCGTGATGTGTTAGCCAAGGGTATCGGCGTAAACCGTAACGAAGATTTA
GCGCTTGATGAGAAATTATTAAATCCATAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3N1L8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.214

99.408

0.728