Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   D1100_RS06020 Genome accession   NZ_CP031869
Coordinates   1325108..1326916 (-) Length   602 a.a.
NCBI ID   WP_005617607.1    Uniprot ID   -
Organism   Actinobacillus pleuropneumoniae strain WF83     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1320108..1331916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1100_RS06000 (D1100_06020) rlmC 1321225..1322400 (+) 1176 WP_005617603.1 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC -
  D1100_RS06005 (D1100_06025) eno 1322607..1323917 (+) 1311 WP_005597992.1 phosphopyruvate hydratase -
  D1100_RS06010 (D1100_06030) - 1323996..1324625 (+) 630 WP_005617605.1 NUDIX hydrolase N-terminal domain-containing protein -
  D1100_RS06015 (D1100_06035) - 1324639..1325049 (+) 411 WP_005617606.1 DUF2251 domain-containing protein -
  D1100_RS06020 (D1100_06040) recQ 1325108..1326916 (-) 1809 WP_005617607.1 ATP-dependent DNA helicase RecQ Machinery gene
  D1100_RS06025 (D1100_06045) cyaY 1327001..1327306 (-) 306 WP_005608334.1 iron donor protein CyaY -
  D1100_RS06030 (D1100_06050) - 1327315..1328091 (-) 777 Protein_1183 glycosyltransferase family 25 protein -
  D1100_RS06035 (D1100_06060) tsaD 1328132..1329175 (-) 1044 WP_005598001.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  D1100_RS06040 (D1100_06065) - 1329267..1330043 (-) 777 WP_005617608.1 outer membrane protein assembly factor BamD -
  D1100_RS06045 (D1100_06070) rluD 1330196..1331173 (+) 978 WP_005598003.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 68471.47 Da        Isoelectric Point: 7.6556

>NTDB_id=272350 D1100_RS06020 WP_005617607.1 1325108..1326916(-) (recQ) [Actinobacillus pleuropneumoniae strain WF83]
MQLSQTAAKDVLNNVFGYQSFRHGQQEVIDSVLAGRDCLVIMTTGGGKSLCYQVPALCLDGITLVISPLISLMKDQVDQL
LTNGIEAGFLNSTQIFEEQQLVEQKALSGQLKLLYLSPEKVMTQGFFHFISLCKISLIAVDEAHCVSQWGHDFRPEYTLL
GNLRDTFPNVPLMALTATADPTTRHDILQHLRLTDPHTYLGSFDRPNIRYTVQEKFKPVEQLAKFISKQQGKSGIVYCNS
RKKVEEITEKLASRKISVMGYHAGMSVQQRETVQNAFQRDNIQVVVATIAFGMGINKSNVRFVVHFDLPRSIESYYQETG
RAGRDDLPSEAVLFYDPADYAWLQKVLLEEPESEQRDIKQHKLQAIGAFAESQTCRRLVLLNYFGESRQEPCKNCDICLD
PPRKYDGTLDAQKVMSVIYRTGQTFGAHHVIGVLRGLNNQKIRQFNHDQLSVYGIGKEQSQDYWLSIIRQLIHLGLIRQN
IVNHSALQLTEEARPVLRSEKKLELAMPRLTFSATAYVQKQSSVRYDKDLFARLRFLRKQIADKENIPPYVVFNDATLQE
MAEFLPLSEVEMLDINGVGERKLERFGGAFLSLIREHCNNRQ

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=272350 D1100_RS06020 WP_005617607.1 1325108..1326916(-) (recQ) [Actinobacillus pleuropneumoniae strain WF83]
ATGCAATTATCTCAAACCGCCGCCAAAGACGTATTGAATAATGTCTTCGGTTATCAATCTTTTCGTCACGGACAACAAGA
AGTGATCGATTCGGTTCTGGCGGGTAGAGATTGTTTAGTCATTATGACCACCGGCGGCGGTAAGTCGCTTTGTTACCAAG
TACCGGCGCTTTGCTTAGACGGCATTACGCTAGTGATTTCTCCGCTGATTTCTTTGATGAAAGATCAGGTTGATCAGTTG
CTTACCAACGGTATCGAAGCCGGCTTTTTAAATTCCACGCAAATTTTTGAAGAACAACAGCTTGTCGAACAGAAAGCACT
TTCCGGTCAGTTGAAATTACTTTATCTCTCGCCGGAAAAAGTAATGACTCAAGGCTTTTTCCATTTTATTTCGTTATGCA
AAATTAGCCTGATTGCAGTCGATGAAGCGCATTGCGTTTCGCAATGGGGGCATGATTTCCGTCCGGAATACACTTTATTA
GGCAATTTGCGTGATACCTTTCCGAATGTGCCGCTGATGGCATTAACGGCAACGGCAGATCCTACGACTCGCCACGATAT
TCTGCAGCACCTGCGCTTAACCGATCCGCATACCTATTTAGGCAGTTTTGATCGCCCGAATATTCGCTATACGGTACAAG
AAAAATTTAAGCCGGTGGAACAGTTGGCAAAATTCATCAGTAAACAGCAGGGCAAGAGCGGTATCGTTTATTGCAATAGC
CGTAAAAAAGTGGAAGAAATTACCGAAAAATTGGCGTCACGTAAAATTTCAGTAATGGGTTACCACGCCGGTATGTCGGT
TCAGCAACGTGAAACGGTTCAAAATGCGTTTCAGCGAGATAATATTCAAGTTGTGGTGGCTACTATTGCTTTCGGGATGG
GGATTAATAAATCAAACGTGCGTTTTGTGGTGCATTTCGATTTGCCACGCAGTATCGAATCCTACTATCAAGAAACCGGG
CGTGCCGGACGTGATGATTTACCATCTGAAGCGGTGTTATTTTATGATCCCGCCGATTATGCGTGGTTACAGAAAGTATT
ATTGGAAGAGCCGGAAAGCGAACAGCGCGATATAAAGCAACATAAATTACAAGCCATCGGTGCTTTTGCCGAATCGCAAA
CCTGCCGCCGTTTAGTGCTATTGAATTATTTCGGCGAATCACGCCAAGAACCCTGTAAAAACTGTGATATTTGCTTAGAT
CCGCCTCGTAAATATGACGGTACGTTAGATGCGCAAAAAGTGATGTCGGTTATTTACCGTACCGGTCAAACTTTTGGCGC
ACATCATGTGATTGGCGTATTACGAGGGTTAAATAACCAAAAAATTCGCCAGTTTAATCATGATCAGCTTTCGGTGTACG
GTATCGGTAAAGAGCAGAGCCAAGATTATTGGTTAAGTATTATTCGTCAATTAATTCATTTGGGTTTAATTCGTCAAAAT
ATCGTGAACCATTCGGCATTACAGCTGACGGAAGAAGCTCGTCCGGTGCTGCGTTCGGAGAAAAAACTTGAATTGGCAAT
GCCTCGCTTAACCTTCTCGGCAACGGCTTATGTACAGAAACAGAGTTCGGTTCGTTACGATAAAGACTTATTTGCTCGCC
TGCGTTTTCTACGTAAACAAATTGCCGATAAAGAAAATATCCCGCCTTATGTGGTATTCAACGATGCGACTTTGCAGGAA
ATGGCGGAATTTTTACCGCTTAGCGAAGTGGAAATGTTGGATATTAATGGGGTCGGAGAACGTAAACTGGAACGTTTCGG
CGGTGCGTTTTTAAGCCTGATTCGAGAGCATTGTAATAATCGCCAATAA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(24-180)

RecQ zinc-binding (RecQ_Zn_bind)

(339-399)

Helicase conserved C-terminal domain (Helicase_C)

(220-324)

HRDC domain (HRDC)

(528-594)

RQC domain (RQC)

(401-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

39.43

99.003

0.39