Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   D1100_RS05980 Genome accession   NZ_CP031869
Coordinates   1317803..1318435 (+) Length   210 a.a.
NCBI ID   WP_005601574.1    Uniprot ID   B3GXZ4
Organism   Actinobacillus pleuropneumoniae strain WF83     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1312803..1323435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1100_RS05965 (D1100_05985) - 1312974..1313165 (-) 192 WP_237601088.1 hypothetical protein -
  D1100_RS11060 - 1313220..1313348 (-) 129 WP_005619459.1 hypothetical protein -
  D1100_RS05970 (D1100_05990) purT 1313868..1315049 (-) 1182 WP_005597983.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  D1100_RS05975 (D1100_05995) plsB 1315172..1317646 (-) 2475 WP_005617596.1 glycerol-3-phosphate 1-O-acyltransferase PlsB -
  D1100_RS05980 (D1100_06000) dinR/lexA 1317803..1318435 (+) 633 WP_005601574.1 transcriptional repressor LexA Regulator
  D1100_RS05985 (D1100_06005) mutH 1318495..1319175 (+) 681 WP_005617598.1 DNA mismatch repair endonuclease MutH -
  D1100_RS05990 (D1100_06010) - 1319261..1319992 (+) 732 WP_005597990.1 TerC family protein -
  D1100_RS05995 (D1100_06015) nagZ 1320107..1321144 (+) 1038 WP_011848533.1 beta-N-acetylhexosaminidase -
  D1100_RS06000 (D1100_06020) rlmC 1321225..1322400 (+) 1176 WP_005617603.1 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23354.73 Da        Isoelectric Point: 5.8460

>NTDB_id=272349 D1100_RS05980 WP_005601574.1 1317803..1318435(+) (dinR/lexA) [Actinobacillus pleuropneumoniae strain WF83]
MSRKHLTARQQEIFDFVKHHIETTGMPPTRVEIAREIGFKSPNAAEEHLKALARKGYIEMLSGTSRGIRILVDNEETAAN
DDGLPLIGKVAAGTPIMAIEHVESHYPVNGAMFNPNADYLLKVNGNSMEKIGILDGDLLAVHKTNFARNGQVVVARVDDE
VTVKRLEKKGDLIYLHPENDELQPIVVDPRIEYIEIEGIAVGVIRNNAWM

Nucleotide


Download         Length: 633 bp        

>NTDB_id=272349 D1100_RS05980 WP_005601574.1 1317803..1318435(+) (dinR/lexA) [Actinobacillus pleuropneumoniae strain WF83]
ATGTCACGTAAACACTTAACGGCTCGTCAGCAAGAAATTTTCGATTTTGTTAAACATCACATAGAAACCACCGGTATGCC
GCCGACCCGTGTTGAAATTGCAAGAGAAATCGGTTTTAAATCGCCGAATGCGGCAGAAGAACACTTAAAAGCATTGGCGC
GTAAAGGTTATATCGAAATGCTTTCCGGTACATCGCGCGGAATTCGTATTTTAGTCGATAACGAAGAAACTGCGGCAAAT
GACGACGGTTTACCGTTAATCGGCAAAGTGGCTGCCGGTACGCCGATTATGGCGATTGAACATGTGGAAAGTCATTATCC
GGTAAACGGCGCGATGTTTAATCCGAATGCCGACTATTTGCTCAAAGTAAACGGTAACTCCATGGAAAAAATCGGTATTT
TAGACGGTGACTTACTTGCGGTGCATAAAACCAATTTTGCCCGTAACGGCCAAGTCGTCGTCGCTCGCGTTGATGACGAA
GTGACGGTAAAACGCTTGGAGAAAAAAGGCGACCTTATTTATCTTCATCCTGAAAATGACGAGTTACAACCGATTGTTGT
TGATCCTCGTATCGAATATATCGAAATTGAAGGAATCGCCGTCGGTGTAATTCGCAATAATGCTTGGATGTAA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(4-67)

Peptidase S24-like (Peptidase_S24)

(85-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B3GXZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

37.379

98.095

0.367