Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   D1100_RS03600 Genome accession   NZ_CP031869
Coordinates   777540..779084 (-) Length   514 a.a.
NCBI ID   WP_005617158.1    Uniprot ID   -
Organism   Actinobacillus pleuropneumoniae strain WF83     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 772540..784084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1100_RS03575 (D1100_03565) efeO 773424..774236 (+) 813 WP_005604121.1 iron uptake system protein EfeO -
  D1100_RS03580 (D1100_03570) efeB 774248..775441 (+) 1194 WP_237601177.1 iron uptake transporter deferrochelatase/peroxidase subunit -
  D1100_RS03585 (D1100_03575) - 775452..776072 (+) 621 WP_005596976.1 hypothetical protein -
  D1100_RS03590 (D1100_03580) - 776111..776929 (-) 819 WP_005604126.1 PHP domain-containing protein -
  D1100_RS03595 (D1100_03585) - 776933..777523 (-) 591 WP_005596980.1 hypothetical protein -
  D1100_RS03600 (D1100_03590) sbcB 777540..779084 (-) 1545 WP_005617158.1 exodeoxyribonuclease I Machinery gene
  D1100_RS03605 (D1100_03595) - 779326..780732 (-) 1407 WP_005614935.1 chloride channel protein -
  D1100_RS03610 (D1100_03600) asnS 780940..782343 (+) 1404 WP_237601178.1 asparagine--tRNA ligase -
  D1100_RS03615 (D1100_03605) epmB 782447..783448 (-) 1002 WP_005600857.1 EF-P beta-lysylation protein EpmB -

Sequence

Protein


Download         Length: 514 a.a.        Molecular weight: 58548.67 Da        Isoelectric Point: 5.9086

>NTDB_id=272334 D1100_RS03600 WP_005617158.1 777540..779084(-) (sbcB) [Actinobacillus pleuropneumoniae strain WF83]
MNKNLTFFFYDYESFGVSPALDRPAQFAGIRTDSDFNIIGEPVMFYCKQTPDYLPSPEAVMVTGITPQQCNAEGVPEPEF
AARIHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFFDPYEYSWKNGNSRWDLLDLVRACYALRPDGIEWVIDENGVPNF
KLENLTKANGIAHENAHDAMADVYATIAMVKLIKQKQPKLFQFFFENRGKKEIEKMIDTGEMTPLVHVSGMFGNARANTA
WIAPIAWHPTNQNQVLCCDLSGDVSALLTDSAEELRTRLYTKKEELAEGVAPVPLKGVHINRCPIIAPAKVLLPENAARL
GIDRERCLENLKLLKANKSLVREKVTEIFMEERSFEPSANVETTLYDGFFSPADKNNMSILRTLPPQELAHHGLQFADER
VEALLFHYRARHYPETLSRAEQIKWQKYCHQQIDAKSAQFAEAIDSLFQIHHDNPEKVKLLENLTAYAAQIAEFQVVKHT
ANAQSEQLVSALNQVAEQRVNKAAKLEMLKTLIK

Nucleotide


Download         Length: 1545 bp        

>NTDB_id=272334 D1100_RS03600 WP_005617158.1 777540..779084(-) (sbcB) [Actinobacillus pleuropneumoniae strain WF83]
ATGAATAAAAATCTTACTTTTTTCTTTTATGATTACGAAAGTTTCGGTGTGAGTCCGGCGTTAGATCGTCCGGCACAGTT
TGCCGGTATTCGTACCGATAGTGATTTTAATATCATCGGTGAGCCGGTGATGTTTTATTGTAAGCAAACACCGGATTATT
TACCTTCGCCTGAAGCGGTGATGGTGACGGGTATTACTCCGCAACAGTGTAACGCTGAAGGCGTGCCGGAACCGGAATTT
GCTGCACGAATCCACGCTGAATTCAGCCAGCCGAACACTTGCATTTTAGGCTATAACAATATTCGTTATGACGATGAAAT
GACCCGTTATACCTTTTTCCGCAATTTCTTTGACCCGTATGAATATAGCTGGAAAAATGGTAATTCTCGTTGGGATCTGT
TAGATCTTGTTCGAGCTTGTTATGCACTGCGTCCGGACGGCATTGAATGGGTAATAGATGAAAACGGTGTGCCGAATTTC
AAATTAGAGAATCTCACTAAAGCGAACGGCATTGCTCATGAAAATGCGCACGATGCAATGGCGGACGTTTACGCCACGAT
TGCGATGGTGAAATTGATTAAGCAAAAACAGCCGAAACTTTTCCAATTTTTCTTTGAGAATCGTGGTAAGAAGGAAATTG
AGAAAATGATTGATACCGGTGAAATGACCCCGTTGGTACACGTTTCCGGTATGTTCGGTAATGCGCGTGCTAATACCGCT
TGGATTGCACCGATTGCGTGGCACCCAACTAATCAAAATCAAGTGTTATGTTGCGATCTATCCGGCGATGTTAGTGCCTT
ATTAACGGATTCAGCGGAAGAATTACGTACTCGTCTATACACTAAAAAAGAAGAGCTGGCTGAAGGTGTTGCACCCGTTC
CATTAAAAGGGGTACATATTAATCGTTGTCCGATTATTGCCCCGGCAAAAGTGTTGTTGCCTGAAAATGCGGCTCGCTTA
GGCATTGATCGTGAGCGTTGTTTGGAAAATCTCAAATTACTGAAGGCGAATAAAAGTTTAGTGCGTGAGAAAGTGACCGA
AATTTTTATGGAAGAACGGAGCTTTGAACCTTCTGCGAATGTGGAAACGACTCTGTATGACGGCTTTTTCTCACCGGCAG
ATAAAAATAATATGTCGATTTTGCGTACGTTACCGCCGCAAGAATTGGCGCATCACGGCTTACAATTCGCCGATGAACGA
GTAGAAGCTTTGTTATTTCATTATCGAGCCAGACATTATCCCGAAACATTGAGCCGAGCGGAACAGATTAAATGGCAGAA
ATATTGTCATCAGCAGATAGATGCCAAATCGGCACAATTTGCCGAAGCGATTGATAGCTTATTCCAAATTCATCACGATA
ATCCGGAAAAGGTAAAATTATTGGAAAATTTGACCGCTTACGCTGCACAAATTGCGGAATTTCAGGTAGTTAAACACACC
GCTAATGCGCAAAGCGAGCAGCTAGTTTCAGCCTTAAACCAAGTAGCGGAACAGAGGGTGAATAAAGCGGCGAAGTTGGA
AATGCTAAAGACATTAATTAAATAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(208-469)

Exonuclease (RNase_T)

(9-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

53.961

90.856

0.49