Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   D1101_RS06485 Genome accession   NZ_CP031866
Coordinates   1405769..1406278 (-) Length   169 a.a.
NCBI ID   WP_005598178.1    Uniprot ID   A3N1L8
Organism   Actinobacillus pleuropneumoniae serovar 8 str. 405     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1400769..1411278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1101_RS06465 (D1101_06530) tehA 1401235..1402185 (-) 951 WP_039709226.1 dicarboxylate transporter/tellurite-resistance protein TehA -
  D1101_RS06470 (D1101_06535) hxpB 1402281..1402931 (-) 651 WP_039709574.1 hexitol phosphatase HxpB -
  D1101_RS11290 (D1101_06540) - 1403109..1403156 (-) 48 Protein_1273 SEC-C metal-binding domain-containing protein -
  D1101_RS06475 (D1101_06545) - 1403169..1403732 (-) 564 WP_005604973.1 flavin reductase family protein -
  D1101_RS06480 (D1101_06550) - 1403819..1405663 (-) 1845 WP_005598177.1 ABC transporter ATP-binding protein -
  D1101_RS06485 (D1101_06555) luxS 1405769..1406278 (-) 510 WP_005598178.1 S-ribosylhomocysteine lyase Regulator
  D1101_RS06490 (D1101_06560) - 1406333..1408999 (-) 2667 WP_039709227.1 PqiB family protein -
  D1101_RS06495 (D1101_06565) fur 1409147..1409596 (-) 450 WP_005598183.1 ferric iron uptake transcriptional regulator -
  D1101_RS06500 (D1101_06570) fldA 1409627..1410151 (-) 525 WP_005598185.1 flavodoxin FldA -
  D1101_RS06505 (D1101_06575) ybfE 1410173..1410457 (-) 285 WP_005620439.1 LexA regulated protein -
  D1101_RS06510 (D1101_06580) ybaK 1410666..1411142 (-) 477 WP_005604978.1 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18869.63 Da        Isoelectric Point: 5.2621

>NTDB_id=272297 D1101_RS06485 WP_005598178.1 1405769..1406278(-) (luxS) [Actinobacillus pleuropneumoniae serovar 8 str. 405]
MPLLDSFKVDHTRMNAPAVRVAKTMTTPKGDTITVFDLRFCRPNIDILPVRGIHTMEHLFAGFMRDHLNSESVEIIDISP
MGCRTGFYMSLIGAPSEADVVSAWTKSMEDALNKVPDVSKIPELNEYQCGSYKEHSLEEAHQIARDVLAKGIGVNRNEDL
ALDEKLLNP

Nucleotide


Download         Length: 510 bp        

>NTDB_id=272297 D1101_RS06485 WP_005598178.1 1405769..1406278(-) (luxS) [Actinobacillus pleuropneumoniae serovar 8 str. 405]
ATGCCTTTATTAGATAGCTTTAAAGTGGATCACACTCGTATGAACGCACCGGCAGTGCGTGTTGCAAAAACGATGACGAC
GCCGAAGGGCGATACGATTACCGTATTCGATTTACGTTTTTGCCGTCCGAATATTGATATTTTACCGGTGCGTGGTATCC
ACACGATGGAACACTTATTTGCCGGCTTTATGCGTGATCATTTAAATAGTGAAAGTGTAGAAATTATTGATATTTCGCCG
ATGGGTTGCCGTACCGGTTTCTATATGTCGTTAATCGGTGCGCCAAGCGAAGCGGATGTGGTTTCGGCGTGGACAAAATC
GATGGAAGATGCTTTAAATAAAGTTCCGGACGTGTCAAAAATTCCGGAATTAAACGAATATCAATGCGGCTCTTATAAAG
AGCATTCGCTTGAAGAAGCGCATCAAATCGCTCGTGATGTGTTAGCCAAGGGTATCGGCGTAAACCGTAACGAAGATTTA
GCGCTTGATGAGAAATTATTAAATCCATAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3N1L8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.214

99.408

0.728

Multiple sequence alignment