Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   D1101_RS05330 Genome accession   NZ_CP031866
Coordinates   1150161..1152167 (+) Length   668 a.a.
NCBI ID   WP_058230476.1    Uniprot ID   -
Organism   Actinobacillus pleuropneumoniae serovar 8 str. 405     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1145161..1157167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1101_RS05305 (D1101_05365) ilvY 1145725..1146609 (-) 885 WP_005597688.1 HTH-type transcriptional activator IlvY -
  D1101_RS05310 (D1101_05370) - 1146610..1147650 (-) 1041 WP_012263045.1 glycosyltransferase family 9 protein -
  D1101_RS05315 (D1101_05375) - 1147652..1148335 (-) 684 WP_005604674.1 glycosyltransferase family 25 protein -
  D1101_RS05320 (D1101_05380) - 1148444..1149505 (+) 1062 WP_218633990.1 heptosyltransferase -
  D1101_RS05325 (D1101_05385) rpmE 1149567..1149779 (-) 213 WP_005597698.1 50S ribosomal protein L31 -
  D1101_RS05330 (D1101_05390) recP/tkt 1150161..1152167 (+) 2007 WP_058230476.1 transketolase Machinery gene
  D1101_RS05335 (D1101_05395) htpG 1152301..1154178 (-) 1878 WP_005608186.1 molecular chaperone HtpG -
  D1101_RS05340 (D1101_05400) - 1154403..1155929 (+) 1527 WP_039709156.1 catalase -
  D1101_RS05345 - 1156097..1156276 (+) 180 WP_005597706.1 helix-turn-helix domain-containing protein -
  D1101_RS05350 (D1101_05405) - 1156266..1156634 (+) 369 Protein_1051 IS3 family transposase -

Sequence

Protein


Download         Length: 668 a.a.        Molecular weight: 73278.81 Da        Isoelectric Point: 5.5975

>NTDB_id=272290 D1101_RS05330 WP_058230476.1 1150161..1152167(+) (recP/tkt) [Actinobacillus pleuropneumoniae serovar 8 str. 405]
MAERKVLANAIRFLSMDAVQKANSGHPGAPMGMADIAEVLWRDFLKHNPTNPKWADRDRFVLSNGHGSMLIYSLLHLTGY
DLSIEDLKQFRQLHSKTPGHPEYGYAPGVETTTGPLGQGITNAVGMAIAEKTLAGQFNREGHKIVDHYTYAFLGDGCLME
GISHEACSLAGTLGLGKLIAFYDDNNISIDGHVDGWFSDDTAQRFEAYGWQVIRNVDGHDAEQIKFAIENAKAETERPTL
IICKTIIGYGSPNKSASHDCHGAPLGNDEIALTRKALNWEYAPFEIPAEIYAEWDAKAQGAVVEKEWNAKFAAYEAAYPE
LAAEFKRRMAGDLPANWEAESKAFIEKLQANPAAIASRKASQNAIEAYAHILPEFLGGSADLASSNLTLWSGSKPIRADH
NVDGNYINYGVREFGMSAIMNSIALHGGFIPYGATFLMFYEYAHNAVRMAALMKQRSLFVYTHDSIGLGEDGPTHQPVEQ
TASLRFIPNLETWRPADQVESAVAWKAAVERKDGPSALIFTRQNLAQQTRTPEQLANVARGGYILRECCQKGGCPDLILI
ATGSEVDLAMKAAEVLDAEGTKVRVVSMPSTNVFDKQDAAYRESVLPSSVTKRVAIEAQLSDFWYKYVGFEGRIVGMNSF
GESAPADQLFKLFGFTVDNVVAKAKEIL

Nucleotide


Download         Length: 2007 bp        

>NTDB_id=272290 D1101_RS05330 WP_058230476.1 1150161..1152167(+) (recP/tkt) [Actinobacillus pleuropneumoniae serovar 8 str. 405]
ATGGCAGAACGTAAAGTATTAGCGAATGCAATTCGCTTTCTAAGTATGGATGCGGTACAAAAAGCTAATTCCGGTCACCC
GGGCGCCCCAATGGGGATGGCGGATATCGCAGAGGTATTATGGCGCGATTTTTTAAAACACAATCCGACCAATCCTAAGT
GGGCGGATCGCGACCGTTTCGTACTTTCAAACGGCCATGGTTCAATGTTAATTTATAGCTTATTACACTTAACGGGCTAT
GATCTTTCAATTGAAGATTTAAAACAATTCCGTCAATTACATTCTAAAACACCGGGTCACCCTGAATACGGTTACGCACC
GGGTGTTGAAACCACAACCGGTCCGTTAGGCCAAGGTATTACCAATGCAGTCGGTATGGCGATTGCGGAAAAAACCTTAG
CCGGACAATTTAACCGTGAAGGTCATAAAATCGTTGATCACTATACTTACGCATTTTTAGGCGACGGCTGCTTAATGGAA
GGTATTTCACACGAAGCTTGTTCATTAGCCGGCACTTTAGGCTTAGGTAAGTTAATCGCTTTCTATGATGACAATAATAT
CTCAATCGATGGTCACGTAGATGGTTGGTTCTCTGATGATACGGCACAACGTTTTGAAGCTTATGGCTGGCAAGTTATCC
GTAATGTAGACGGTCATGATGCGGAACAAATCAAATTTGCCATTGAAAATGCAAAAGCGGAGACCGAGCGTCCGACATTA
ATTATCTGTAAAACCATTATCGGTTACGGTTCTCCGAACAAATCGGCATCGCATGACTGCCACGGTGCGCCGTTAGGTAA
TGATGAAATCGCATTAACCCGTAAAGCACTCAACTGGGAATATGCGCCGTTTGAAATTCCGGCTGAAATCTATGCGGAAT
GGGATGCCAAAGCGCAAGGTGCGGTTGTAGAAAAAGAATGGAATGCTAAATTTGCGGCTTATGAAGCGGCGTATCCTGAA
TTAGCGGCGGAATTTAAACGTCGTATGGCGGGTGATTTACCGGCAAACTGGGAAGCGGAAAGTAAAGCGTTTATTGAAAA
ATTACAAGCAAATCCGGCGGCAATCGCAAGCCGTAAAGCATCACAAAATGCGATTGAAGCTTATGCGCATATCTTACCGG
AATTCTTAGGCGGTTCTGCCGACTTAGCAAGTTCTAACTTAACCTTATGGTCAGGTTCAAAACCAATCCGTGCGGATCAT
AACGTCGATGGCAACTACATCAACTACGGTGTACGTGAATTCGGTATGTCTGCAATTATGAACAGTATTGCATTACACGG
CGGTTTTATTCCTTACGGTGCAACATTCTTAATGTTCTATGAATATGCCCACAATGCGGTGCGTATGGCGGCATTAATGA
AACAACGCTCATTATTCGTTTATACACATGATTCTATCGGTTTAGGCGAAGACGGCCCGACTCACCAACCGGTAGAACAA
ACCGCATCATTACGTTTCATTCCGAACTTAGAAACATGGCGTCCGGCTGACCAAGTGGAATCTGCTGTTGCATGGAAAGC
AGCGGTTGAACGTAAAGACGGCCCGAGTGCATTAATCTTTACTCGCCAAAATCTTGCGCAACAAACACGTACGCCGGAAC
AATTGGCAAACGTTGCTCGCGGTGGTTATATCTTACGTGAATGCTGTCAAAAAGGCGGTTGTCCGGATTTAATTCTCATC
GCAACCGGCTCAGAAGTGGATTTAGCTATGAAAGCAGCTGAAGTATTAGATGCGGAAGGTACGAAAGTACGTGTTGTTTC
CATGCCAAGTACCAATGTATTCGACAAACAAGATGCCGCATATCGTGAAAGCGTATTACCAAGCTCAGTAACCAAACGTG
TAGCAATCGAAGCACAATTATCTGATTTCTGGTACAAATACGTTGGCTTTGAAGGTCGTATCGTAGGTATGAATAGCTTC
GGTGAGTCTGCGCCAGCGGATCAACTTTTCAAACTATTCGGTTTCACTGTTGATAACGTGGTAGCGAAAGCGAAAGAAAT
TTTATAA

Domains

Predicted by InterProScan.

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(5-334)

Transketolase, pyrimidine binding domain (Transket_pyr)

(354-526)

Transketolase, C-terminal domain (Transketolase_C)

(555-660)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

48.036

99.102

0.476

Multiple sequence alignment