Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   D1101_RS03695 Genome accession   NZ_CP031866
Coordinates   781208..782752 (-) Length   514 a.a.
NCBI ID   WP_039709072.1    Uniprot ID   -
Organism   Actinobacillus pleuropneumoniae serovar 8 str. 405     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 776208..787752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1101_RS03670 (D1101_03695) efeO 777091..777903 (+) 813 WP_039709069.1 iron uptake system protein EfeO -
  D1101_RS03675 (D1101_03700) efeB 777915..779108 (+) 1194 WP_005604123.1 iron uptake transporter deferrochelatase/peroxidase subunit -
  D1101_RS03680 (D1101_03705) - 779119..779739 (+) 621 WP_039709071.1 hypothetical protein -
  D1101_RS03685 (D1101_03710) - 779779..780597 (-) 819 WP_005604126.1 PHP domain-containing protein -
  D1101_RS03690 (D1101_03715) - 780601..781191 (-) 591 WP_005611913.1 hypothetical protein -
  D1101_RS03695 (D1101_03720) sbcB 781208..782752 (-) 1545 WP_039709072.1 exodeoxyribonuclease I Machinery gene
  D1101_RS03700 (D1101_03725) - 782994..784400 (-) 1407 WP_005614935.1 chloride channel protein -
  D1101_RS03705 (D1101_03730) asnS 784608..786011 (+) 1404 WP_039709073.1 asparagine--tRNA ligase -
  D1101_RS03710 (D1101_03735) epmB 786113..787114 (-) 1002 WP_039709074.1 EF-P beta-lysylation protein EpmB -

Sequence

Protein


Download         Length: 514 a.a.        Molecular weight: 58757.04 Da        Isoelectric Point: 6.0414

>NTDB_id=272279 D1101_RS03695 WP_039709072.1 781208..782752(-) (sbcB) [Actinobacillus pleuropneumoniae serovar 8 str. 405]
MNKNLTFFFYDYESFGVSPALDRPAQFAGIRTDSDFNIIGEPVMFYCKQTPDYLPSPEAVMVTGITPQQCNAEGVPEPEF
AARIHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFFDPYEYSWKNGNSRWDLLDLVRACYALRPDGIEWVIDENGVPNF
KLENLTKANGIAHENAHDAMADVYATIAMAKLIKQKQPKLFQFFFENRGKKEIEKMIDTGEMTPLVHVSGMFGNARANTA
WIAPIAWHPTNQNQVLCCDLSGDVSALLTDSAEELRTRLYTKKEELAEAVAPVPLKGVHINRCPIIAPAKVLLPENAARL
GIDRERCLENLKLLKANKSLVREKVTEIFMEERRFEPSANVETTLYDGFFSPADKNNMAILRTLPPRELAHHGLQFADER
VEALLFHYRARHYPETLSRAEQIKWQKYCHQQIDAKSVQFAEAIDILFQIHHDNPEKVKLLENLTAYAAQIAEFQVVKHT
ANEQNEQLVSALNQVAEQRMNKAAKLEMLKALIK

Nucleotide


Download         Length: 1545 bp        

>NTDB_id=272279 D1101_RS03695 WP_039709072.1 781208..782752(-) (sbcB) [Actinobacillus pleuropneumoniae serovar 8 str. 405]
ATGAATAAAAATCTTACTTTTTTCTTTTATGATTACGAAAGTTTCGGTGTGAGTCCGGCGTTAGATCGTCCGGCACAGTT
TGCCGGTATTCGTACCGATAGTGATTTTAATATCATCGGTGAGCCGGTGATGTTTTATTGTAAGCAAACACCGGATTATT
TACCTTCGCCTGAAGCGGTGATGGTGACGGGTATTACTCCGCAACAGTGTAACGCTGAAGGCGTGCCGGAACCGGAATTT
GCCGCACGAATCCACGCTGAATTCAGCCAGCCGAACACTTGCATTTTAGGCTATAACAATATTCGTTATGACGATGAAAT
GACCCGTTATACCTTTTTCCGCAATTTCTTTGACCCGTATGAATATAGCTGGAAAAATGGTAATTCTCGTTGGGATCTGT
TAGATCTTGTTCGAGCTTGTTATGCACTGCGTCCGGACGGCATTGAATGGGTAATAGATGAAAACGGTGTGCCGAATTTC
AAATTAGAGAATCTCACTAAAGCTAACGGCATTGCTCATGAAAATGCGCACGATGCAATGGCGGACGTTTACGCCACGAT
TGCGATGGCGAAATTGATTAAGCAAAAGCAGCCGAAACTTTTTCAATTTTTCTTTGAAAATCGTGGTAAGAAAGAAATTG
AGAAAATGATTGATACCGGTGAAATGACCCCGTTGGTACACGTTTCCGGTATGTTCGGTAATGCGCGTGCTAATACCGCT
TGGATTGCACCGATTGCGTGGCACCCAACTAATCAAAATCAAGTGTTATGTTGCGATCTATCCGGCGATGTTAGTGCCTT
ATTAACGGATTCAGCGGAAGAATTACGTACTCGTCTATACACTAAAAAAGAAGAGCTGGCTGAAGCTGTTGCACCCGTTC
CATTAAAAGGGGTACATATTAATCGTTGTCCGATTATTGCCCCGGCAAAAGTGTTGTTGCCTGAAAATGCGGCTCGCTTA
GGCATTGATCGTGAGCGTTGTTTGGAAAATCTCAAATTACTGAAGGCGAATAAAAGTTTAGTGCGTGAGAAAGTGACCGA
AATTTTTATGGAAGAACGGCGCTTTGAGCCTTCTGCGAATGTGGAAACGACTCTGTATGACGGCTTTTTCTCACCGGCAG
ATAAAAATAATATGGCGATTTTGCGTACGTTACCGCCGCGAGAATTGGCGCATCACGGCTTACAATTCGCCGATGAACGA
GTAGAAGCGTTGTTATTTCATTATCGAGCCAGACATTATCCCGAAACATTGAGCCGAGCGGAACAGATTAAATGGCAGAA
ATATTGTCATCAGCAGATAGATGCCAAATCGGTACAATTTGCCGAAGCGATTGATATCTTATTCCAAATTCATCACGATA
ATCCGGAAAAGGTAAAATTATTGGAAAATTTGACCGCTTACGCTGCACAAATTGCGGAATTTCAGGTAGTTAAACACACC
GCTAATGAACAAAATGAACAGTTGGTTTCAGCCTTAAACCAAGTGGCGGAACAGAGGATGAATAAAGCTGCGAAGTTGGA
AATGCTAAAGGCATTAATTAAATAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(208-469)

Exonuclease (RNase_T)

(9-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

54.176

90.856

0.492

Multiple sequence alignment