Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   AM457_RS02750 Genome accession   NZ_CP026761
Coordinates   587894..588535 (-) Length   213 a.a.
NCBI ID   WP_000201223.1    Uniprot ID   N9LAP0
Organism   Acinetobacter baumannii strain AR_0078     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 582894..593535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM457_RS02730 (AM457_02730) aroK 583811..584380 (-) 570 WP_000643712.1 shikimate kinase AroK -
  AM457_RS02735 (AM457_02735) pilQ 584392..586557 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  AM457_RS02740 (AM457_02740) pilP 586619..587146 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  AM457_RS02745 (AM457_02745) pilO 587157..587897 (-) 741 WP_000076102.1 type 4a pilus biogenesis protein PilO Machinery gene
  AM457_RS02750 (AM457_02750) pilN 587894..588535 (-) 642 WP_000201223.1 PilN domain-containing protein Machinery gene
  AM457_RS02755 (AM457_02755) pilM 588535..589593 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  AM457_RS02760 (AM457_02760) ponA 589755..592310 (+) 2556 WP_000736681.1 penicillin-binding protein PBP1a -
  AM457_RS02765 (AM457_02765) - 592328..593152 (-) 825 WP_004712591.1 putative RNA methyltransferase -
  AM457_RS02770 (AM457_02770) - 593155..593487 (-) 333 WP_000169602.1 DUF7709 family protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23999.36 Da        Isoelectric Point: 5.3968

>NTDB_id=272273 AM457_RS02750 WP_000201223.1 587894..588535(-) (pilN) [Acinetobacter baumannii strain AR_0078]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPPAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVATTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=272273 AM457_RS02750 WP_000201223.1 587894..588535(-) (pilN) [Acinetobacter baumannii strain AR_0078]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATCCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCACCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAGAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGGCCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAP0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.061

100

0.991
  comN Acinetobacter baylyi ADP1

72.115

97.653

0.704

Multiple sequence alignment