Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   D1102_RS06645 Genome accession   NZ_CP031865
Coordinates   1442696..1443205 (-) Length   169 a.a.
NCBI ID   WP_005598178.1    Uniprot ID   A3N1L8
Organism   Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1437696..1448205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1102_RS06620 (D1102_06635) tehA 1438164..1439114 (-) 951 WP_005598173.1 dicarboxylate transporter/tellurite-resistance protein TehA -
  D1102_RS06625 (D1102_06640) hxpB 1439210..1439860 (-) 651 WP_005598175.1 hexitol phosphatase HxpB -
  D1102_RS11270 (D1102_06645) - 1440038..1440085 (-) 48 Protein_1295 SEC-C metal-binding domain-containing protein -
  D1102_RS11215 (D1102_06650) - 1440098..1440659 (-) 562 Protein_1296 flavin reductase family protein -
  D1102_RS06640 (D1102_06655) - 1440746..1442590 (-) 1845 WP_005598177.1 ABC transporter ATP-binding protein -
  D1102_RS06645 (D1102_06660) luxS 1442696..1443205 (-) 510 WP_005598178.1 S-ribosylhomocysteine lyase Regulator
  D1102_RS06650 (D1102_06665) - 1443260..1445926 (-) 2667 WP_005598181.1 PqiB family protein -
  D1102_RS06655 (D1102_06670) fur 1446074..1446523 (-) 450 WP_005598183.1 ferric iron uptake transcriptional regulator -
  D1102_RS06660 (D1102_06675) fldA 1446554..1447078 (-) 525 WP_005598185.1 flavodoxin FldA -
  D1102_RS06665 (D1102_06680) ybfE 1447100..1447384 (-) 285 WP_005620439.1 LexA regulated protein -
  D1102_RS06670 (D1102_06685) ybaK 1447593..1448069 (-) 477 WP_005598189.1 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18869.63 Da        Isoelectric Point: 5.2621

>NTDB_id=272242 D1102_RS06645 WP_005598178.1 1442696..1443205(-) (luxS) [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261]
MPLLDSFKVDHTRMNAPAVRVAKTMTTPKGDTITVFDLRFCRPNIDILPVRGIHTMEHLFAGFMRDHLNSESVEIIDISP
MGCRTGFYMSLIGAPSEADVVSAWTKSMEDALNKVPDVSKIPELNEYQCGSYKEHSLEEAHQIARDVLAKGIGVNRNEDL
ALDEKLLNP

Nucleotide


Download         Length: 510 bp        

>NTDB_id=272242 D1102_RS06645 WP_005598178.1 1442696..1443205(-) (luxS) [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261]
ATGCCTTTATTAGATAGCTTTAAAGTGGATCACACTCGTATGAACGCACCGGCAGTGCGTGTTGCAAAAACGATGACGAC
GCCGAAGGGCGATACGATTACCGTATTCGATTTACGTTTTTGCCGTCCGAATATTGATATTTTACCGGTGCGTGGTATCC
ACACGATGGAACACTTATTTGCCGGCTTTATGCGTGATCATTTAAATAGTGAAAGTGTAGAAATTATTGATATTTCGCCG
ATGGGTTGCCGTACCGGTTTCTATATGTCGTTAATCGGTGCGCCAAGCGAAGCGGATGTGGTTTCGGCGTGGACAAAATC
GATGGAAGATGCTTTAAATAAAGTACCGGACGTGTCAAAAATTCCGGAATTAAACGAATATCAATGCGGCTCTTATAAAG
AGCATTCGCTTGAAGAAGCGCATCAAATCGCTCGTGATGTGTTAGCCAAGGGTATCGGCGTAAACCGTAACGAAGATTTA
GCGCTTGATGAGAAATTATTAAATCCATAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3N1L8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.214

99.408

0.728