Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   NMC_RS02230 Genome accession   NC_008767
Coordinates   428981..429526 (-) Length   181 a.a.
NCBI ID   WP_002214522.1    Uniprot ID   Q7DD77
Organism   Neisseria meningitidis FAM18     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 423981..434526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMC_RS02215 (NMC0406) aroB 424559..425638 (-) 1080 WP_002221481.1 3-dehydroquinate synthase -
  NMC_RS02220 (NMC0407) - 425718..426230 (-) 513 WP_002214526.1 shikimate kinase -
  NMC_RS02225 (NMC0408) pilQ 427192..428962 (-) 1771 Protein_411 type IV pilus secretin PilQ -
  NMC_RS02230 (NMC0409) pilP 428981..429526 (-) 546 WP_002214522.1 pilus assembly protein PilP Machinery gene
  NMC_RS02235 (NMC0410) - 429544..430191 (-) 648 WP_002217908.1 type 4a pilus biogenesis protein PilO -
  NMC_RS02240 (NMC0411) pilN 430192..430791 (-) 600 WP_002221479.1 PilN domain-containing protein Machinery gene
  NMC_RS02245 (NMC0412) - 430794..431909 (-) 1116 WP_002214517.1 type IV pilus biogenesis protein PilM -
  NMC_RS02250 (NMC0414) - 432061..434457 (+) 2397 WP_002221477.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20067.55 Da        Isoelectric Point: 4.6512

>NTDB_id=27223 NMC_RS02230 WP_002214522.1 428981..429526(-) (pilP) [Neisseria meningitidis FAM18]
MKHYALLISFLALSACSQGSEDLNEWMAQTRREAKAEIIPFQAPTLPVAPVYSPPQLTGPNAFDFRRMETDKKGENAPDT
KRIKETLEKFSLENMRYVGILKSGQKVSGFIEAEGYVYTVGVGNYLGQNYGRIESITDDSIVLNELIEDSTGNWVSRKAE
LLLNSSDKNTEQAAAPAAEQN

Nucleotide


Download         Length: 546 bp        

>NTDB_id=27223 NMC_RS02230 WP_002214522.1 428981..429526(-) (pilP) [Neisseria meningitidis FAM18]
ATGAAACACTATGCCTTACTCATCAGCTTTCTGGCTCTCTCCGCGTGTTCCCAAGGTTCTGAGGACCTAAACGAATGGAT
GGCACAAACGCGACGCGAAGCCAAAGCAGAAATCATACCTTTCCAAGCACCTACCCTGCCGGTTGCGCCGGTATACAGCC
CGCCGCAGCTTACAGGGCCGAACGCATTCGACTTCCGCCGCATGGAAACCGACAAAAAAGGGGAAAATGCCCCCGACACC
AAGCGTATTAAAGAAACGCTGGAAAAATTCAGTTTGGAAAATATGCGTTATGTCGGCATTTTGAAGTCTGGACAGAAAGT
CTCCGGCTTCATCGAGGCTGAAGGTTATGTCTACACTGTCGGTGTCGGCAACTATTTGGGACAAAACTACGGTAGAATCG
AAAGCATTACCGACGACAGCATCGTCCTGAACGAGCTGATAGAAGACAGCACGGGCAACTGGGTTTCCCGTAAAGCAGAA
CTGCTGTTGAATTCTTCCGACAAAAACACCGAACAAGCGGCAGCACCTGCCGCAGAACAAAATTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(22-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2IVW
  PDB 4AV2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

100

100

1

Multiple sequence alignment