Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AM456_RS05155 Genome accession   NZ_CP026755
Coordinates   867158..867787 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain AR_0077     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 862158..872787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM456_RS05130 (AM456_05130) ycbZ 862562..864322 (-) 1761 WP_094029822.1 Lon protease family protein -
  AM456_RS05135 (AM456_05135) matP 864508..864960 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  AM456_RS05140 (AM456_05140) ompA 865035..866075 (-) 1041 WP_001313715.1 porin OmpA -
  AM456_RS05150 (AM456_05150) sulA 866431..866940 (-) 510 WP_097465839.1 SOS-induced cell division inhibitor SulA -
  AM456_RS05155 (AM456_05155) sxy/tfoX 867158..867787 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AM456_RS05160 (AM456_05160) yccS 867750..869912 (-) 2163 WP_000875039.1 YccS family putative transporter -
  AM456_RS05165 (AM456_05165) yccF 869922..870368 (-) 447 WP_001261235.1 YccF domain-containing protein -
  AM456_RS05170 (AM456_05170) helD 870491..872545 (+) 2055 WP_022645482.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=272216 AM456_RS05155 WP_000839153.1 867158..867787(+) (sxy/tfoX) [Escherichia coli strain AR_0077]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=272216 AM456_RS05155 WP_000839153.1 867158..867787(+) (sxy/tfoX) [Escherichia coli strain AR_0077]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAC
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTAGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment