Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   D1103_RS05820 Genome accession   NZ_CP031864
Coordinates   1302128..1302760 (+) Length   210 a.a.
NCBI ID   WP_005608326.1    Uniprot ID   A3N1B4
Organism   Actinobacillus pleuropneumoniae serovar 10 str. D13039     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1297128..1307760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1103_RS05805 (D1103_05865) - 1297299..1297499 (-) 201 WP_005620223.1 hypothetical protein -
  D1103_RS11005 - 1297545..1297673 (-) 129 WP_005619459.1 hypothetical protein -
  D1103_RS05810 (D1103_05870) purT 1298193..1299374 (-) 1182 WP_005610416.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  D1103_RS05815 (D1103_05875) plsB 1299497..1301971 (-) 2475 WP_005612521.1 glycerol-3-phosphate 1-O-acyltransferase PlsB -
  D1103_RS05820 (D1103_05880) dinR/lexA 1302128..1302760 (+) 633 WP_005608326.1 transcriptional repressor LexA Regulator
  D1103_RS05825 (D1103_05885) mutH 1302820..1303500 (+) 681 WP_005597989.1 DNA mismatch repair endonuclease MutH -
  D1103_RS05830 (D1103_05890) - 1303586..1304317 (+) 732 WP_005612523.1 TerC family protein -
  D1103_RS05835 (D1103_05895) nagZ 1304432..1305469 (+) 1038 WP_043995118.1 beta-N-acetylhexosaminidase -
  D1103_RS05840 (D1103_05900) rlmC 1305550..1306725 (+) 1176 WP_005612527.1 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23368.76 Da        Isoelectric Point: 5.8460

>NTDB_id=272183 D1103_RS05820 WP_005608326.1 1302128..1302760(+) (dinR/lexA) [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
MSRKHLTARQQEIFDFVKHHIETTGMPPTRVEIAREIGFKSPNAAEEHLKALARKGYIEMLSGTSRGIRILVDNEETAAN
DDGLPLIGKVAAGTPIMAIEHVESHYPVNGAMFNPNADYLLKVNGNSMEKIGILDGDLLAVHKTNFARNGQVVVARVDDE
VTVKRLEKKGDLIYLHPENDELQPIIVDPRIEYIEIEGIAVGVIRNNAWM

Nucleotide


Download         Length: 633 bp        

>NTDB_id=272183 D1103_RS05820 WP_005608326.1 1302128..1302760(+) (dinR/lexA) [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
ATGTCACGTAAACACTTAACGGCTCGTCAGCAAGAAATTTTTGATTTTGTTAAACATCACATAGAAACCACCGGTATGCC
GCCGACTCGTGTTGAAATTGCAAGAGAAATCGGTTTTAAATCGCCGAATGCGGCAGAAGAACACTTAAAAGCATTGGCGC
GTAAAGGTTATATCGAAATGCTTTCCGGTACATCGCGCGGAATTCGTATTTTAGTCGATAACGAAGAAACTGCGGCAAAT
GACGATGGTTTACCGTTAATCGGCAAAGTGGCTGCCGGTACGCCGATTATGGCGATTGAACATGTGGAAAGTCATTATCC
GGTAAACGGCGCGATGTTTAATCCGAATGCCGACTATTTGCTCAAAGTAAACGGTAACTCCATGGAAAAAATCGGTATTT
TAGACGGTGACTTACTTGCGGTGCATAAAACCAATTTTGCCCGTAACGGCCAAGTCGTCGTCGCTCGCGTTGATGACGAA
GTGACCGTAAAACGCTTGGAGAAAAAAGGCGATCTTATTTATCTTCATCCTGAAAATGACGAGTTACAACCGATTATTGT
CGATCCTCGTATCGAATATATCGAAATTGAAGGAATCGCCGTCGGTGTAATTCGCAATAACGCTTGGATGTAA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(85-200)

LexA DNA binding domain (LexA_DNA_bind)

(4-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3N1B4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

37.864

98.095

0.371