Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   D1104_RS03600 Genome accession   NZ_CP031863
Coordinates   780660..782204 (-) Length   514 a.a.
NCBI ID   WP_005596982.1    Uniprot ID   A0ABM6X1N4
Organism   Actinobacillus pleuropneumoniae serovar 11 str. 56153     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 775660..787204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1104_RS03575 (D1104_03615) efeO 776544..777356 (+) 813 WP_005596972.1 iron uptake system protein EfeO -
  D1104_RS03580 (D1104_03620) efeB 777368..778561 (+) 1194 WP_005596974.1 iron uptake transporter deferrochelatase/peroxidase subunit -
  D1104_RS03585 (D1104_03625) - 778572..779192 (+) 621 WP_005596976.1 hypothetical protein -
  D1104_RS03590 (D1104_03630) - 779231..780049 (-) 819 WP_005596978.1 PHP domain-containing protein -
  D1104_RS03595 (D1104_03635) - 780053..780643 (-) 591 WP_005596980.1 hypothetical protein -
  D1104_RS03600 (D1104_03640) sbcB 780660..782204 (-) 1545 WP_005596982.1 exodeoxyribonuclease I Machinery gene
  D1104_RS03605 (D1104_03645) - 782446..783849 (-) 1404 WP_005596983.1 chloride channel protein -
  D1104_RS03610 (D1104_03650) asnS 784057..785460 (+) 1404 WP_005596985.1 asparagine--tRNA ligase -
  D1104_RS03615 (D1104_03655) epmB 785562..786563 (-) 1002 WP_005596987.1 EF-P beta-lysylation protein EpmB -

Sequence

Protein


Download         Length: 514 a.a.        Molecular weight: 58575.66 Da        Isoelectric Point: 5.7736

>NTDB_id=272113 D1104_RS03600 WP_005596982.1 780660..782204(-) (sbcB) [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
MNKNLTFFFYDYESFGVGPALDRPAQFAGIRTDSDFNIIGEPVMFYCKQTPDYLPSPEAVMVTGITPQQCNAEGVPEPEF
AARIHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFFDPYEYSWKNGNSRWDLLDLVRACYALRPDGIEWVIDENGVPNF
KLENLTKANGIAHENAHDAMADVYATIAMAKLIKQKQPKLFQFFFENRGKKEIEKMIDTGEMTPLVHVSGMFGNARANTA
WIAPIAWHPTNQNQVLCCDLSGDVSALLTDSAEELRTRLYTKKEELAEGVAPVPLKGVHINRCPIIAPAKVLLPENAARL
GIDRERCLENLKLLKANKSLVREKVTEIFMEERSFEPSANVETTLYDGFFSPADKNNMSILRTLPPQELAHHGLQFADER
VEALLFHYRARHYPETLSRAEQIKWQKYCHQQIDAKSAQFAEAIDSLFQIHHDNPEKVKLLENLTAYAAQIAEFQVVKHT
ANEQNEQLVSALNQVAEQRVNKAAKLEMLKTLIK

Nucleotide


Download         Length: 1545 bp        

>NTDB_id=272113 D1104_RS03600 WP_005596982.1 780660..782204(-) (sbcB) [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
ATGAATAAAAATCTTACTTTTTTCTTTTATGATTACGAAAGTTTCGGTGTGGGTCCGGCGTTAGATCGTCCGGCACAGTT
TGCCGGTATTCGTACCGATAGTGATTTTAATATCATCGGTGAGCCGGTGATGTTTTATTGTAAGCAAACACCGGATTATT
TACCTTCGCCTGAAGCGGTGATGGTGACGGGTATTACTCCGCAACAGTGTAACGCTGAAGGCGTGCCGGAACCGGAATTT
GCTGCACGAATCCACGCTGAATTCAGCCAGCCGAACACTTGCATTTTAGGCTATAACAATATTCGTTATGACGATGAAAT
GACCCGTTATACCTTTTTCCGCAATTTCTTTGACCCGTATGAATATAGCTGGAAAAATGGTAATTCTCGTTGGGATCTGT
TAGATCTTGTTCGAGCTTGTTATGCACTGCGTCCGGACGGCATTGAATGGGTAATAGATGAAAACGGTGTGCCGAATTTC
AAATTAGAGAATCTCACTAAAGCGAACGGCATTGCTCATGAAAATGCGCACGATGCAATGGCGGACGTTTACGCCACGAT
TGCGATGGCGAAATTGATTAAGCAAAAACAGCCGAAACTTTTCCAATTTTTCTTTGAGAATCGTGGTAAGAAGGAAATTG
AGAAAATGATTGATACCGGTGAAATGACCCCGTTGGTACACGTTTCCGGTATGTTCGGTAATGCGCGTGCTAATACCGCT
TGGATTGCACCGATTGCGTGGCACCCAACTAATCAAAATCAAGTGTTATGTTGCGATCTATCCGGCGATGTTAGTGCCTT
ATTAACGGATTCAGCGGAAGAATTACGTACTCGTCTATACACTAAAAAAGAAGAGCTGGCTGAAGGTGTTGCACCCGTTC
CATTAAAAGGGGTACATATTAATCGTTGTCCGATTATTGCCCCGGCAAAAGTGTTGTTGCCTGAAAATGCGGCTCGCTTA
GGCATTGATCGTGAGCGTTGTTTGGAAAATCTCAAATTACTGAAGGCGAATAAAAGTTTAGTGCGTGAGAAAGTGACCGA
AATTTTTATGGAAGAACGGAGCTTTGAACCTTCTGCGAATGTGGAAACGACTCTGTATGACGGCTTTTTCTCACCGGCAG
ATAAAAATAATATGTCGATTTTGCGTACGTTACCGCCGCAAGAATTGGCGCATCACGGCTTACAATTCGCCGATGAACGA
GTAGAAGCTTTGTTATTTCATTATCGAGCCAGACATTATCCCGAAACATTGAGCCGAGCGGAACAGATTAAATGGCAGAA
ATATTGTCATCAGCAGATAGATGCCAAATCGGCACAATTTGCCGAAGCGATTGATAGCTTATTCCAAATTCATCACGATA
ATCCGGAAAAGGTAAAATTATTGGAAAATTTGACCGCTTACGCTGCACAAATTGCGGAATTTCAGGTAGTTAAACACACC
GCTAATGAACAAAATGAACAGTTGGTTTCAGCCTTAAACCAAGTAGCGGAACAGAGGGTGAATAAAGCGGCGAAGTTGGA
AATGCTAAAGACATTAATTAAATAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(9-188)

Exonuclease C-terminal (ExoI_SH3)

(208-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

54.176

90.856

0.492