Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   D1104_RS00400 Genome accession   NZ_CP031863
Coordinates   85208..85813 (-) Length   201 a.a.
NCBI ID   WP_005618700.1    Uniprot ID   A0ABM6X5M1
Organism   Actinobacillus pleuropneumoniae serovar 11 str. 56153     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 80208..90813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1104_RS00370 (D1104_00365) - 80957..81946 (+) 990 WP_005595702.1 peptide ABC transporter ATP-binding protein -
  D1104_RS00375 (D1104_00370) psiE 82019..82429 (-) 411 WP_005595704.1 phosphate-starvation-inducible protein PsiE -
  D1104_RS00380 (D1104_00375) - 82507..83139 (-) 633 WP_005595707.1 hydrolase -
  D1104_RS00385 (D1104_00380) - 83194..83538 (-) 345 WP_005595710.1 RidA family protein -
  D1104_RS00390 (D1104_00385) - 83625..84662 (-) 1038 WP_005595712.1 branched-chain amino acid aminotransferase -
  D1104_RS00395 (D1104_00390) grxD 84804..85136 (-) 333 WP_005595713.1 Grx4 family monothiol glutaredoxin -
  D1104_RS00400 (D1104_00395) recR 85208..85813 (-) 606 WP_005618700.1 recombination mediator RecR Machinery gene
  D1104_RS00405 (D1104_00400) - 85884..86213 (-) 330 WP_005600053.1 YbaB/EbfC family nucleoid-associated protein -
  D1104_RS00410 (D1104_00405) - 86382..87239 (-) 858 WP_005595716.1 energy transducer TonB family protein -
  D1104_RS00415 (D1104_00410) exbD 87249..87638 (-) 390 WP_005595717.1 TonB system transport protein ExbD -
  D1104_RS00420 (D1104_00415) exbB 87683..88135 (-) 453 WP_005595719.1 TonB-system energizer ExbB -
  D1104_RS00425 (D1104_00420) glpE 88323..88649 (+) 327 WP_005595720.1 thiosulfate sulfurtransferase GlpE -
  D1104_RS00430 (D1104_00425) - 88693..89538 (+) 846 WP_005595722.1 co-chaperone YbbN -
  D1104_RS00435 (D1104_00430) dhaM 89612..90019 (-) 408 WP_005595723.1 dihydroxyacetone kinase phosphoryl donor subunit DhaM -
  D1104_RS00440 (D1104_00435) dhaL 90028..90654 (-) 627 WP_005595724.1 dihydroxyacetone kinase subunit DhaL -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 22182.40 Da        Isoelectric Point: 6.4865

>NTDB_id=272099 D1104_RS00400 WP_005618700.1 85208..85813(-) (recR) [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
MQISPLLENLMEALRALPGVGPKSAQRMAYHLLQRNRSGGINLSKALNEAMTHIGHCRSCRTFTEEDECNICKNPRRQMS
GQLCVVEMPEDIQAIEQTGQFSGRYFVLMGHLSPLDGIGPREIGLDLLQSRLENESFHEVILATNPTIEGDATANYIAEM
CRIHNVKVTRIAHGIPVGGSLEMVDGTTLSHSFAGRRDISL

Nucleotide


Download         Length: 606 bp        

>NTDB_id=272099 D1104_RS00400 WP_005618700.1 85208..85813(-) (recR) [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
ATGCAAATTAGCCCTTTACTCGAAAATCTGATGGAAGCCCTACGTGCATTACCCGGCGTCGGTCCGAAATCCGCACAACG
TATGGCGTATCATTTATTGCAACGCAATCGTTCCGGCGGTATCAATTTATCCAAAGCCTTAAATGAAGCGATGACGCATA
TCGGTCATTGCCGTTCTTGCCGTACTTTTACCGAAGAAGACGAATGCAATATTTGTAAAAATCCTCGTCGCCAAATGAGC
GGTCAGCTTTGCGTAGTAGAAATGCCGGAAGATATTCAAGCGATTGAACAAACCGGACAGTTTTCGGGACGTTATTTCGT
ATTAATGGGACATCTTTCACCGCTAGACGGTATCGGACCGAGAGAAATCGGCTTGGATTTGTTACAAAGCCGTTTAGAAA
ACGAATCTTTTCACGAAGTTATTCTAGCTACCAATCCGACCATTGAAGGTGATGCCACCGCCAACTATATTGCGGAAATG
TGCCGCATTCACAACGTGAAAGTAACTCGAATTGCGCATGGGATTCCGGTCGGCGGTTCATTAGAAATGGTGGACGGTAC
GACCCTTTCCCACTCTTTTGCCGGCAGACGAGATATTTCGTTATAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(82-172)

RecR protein (RecR_ZnF)

(42-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

42.714

99.005

0.423
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42

99.502

0.418