Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   C2I28_RS24355 Genome accession   NZ_CP026736
Coordinates   4770577..4770999 (+) Length   140 a.a.
NCBI ID   WP_099000379.1    Uniprot ID   -
Organism   Priestia megaterium strain YC4-R4     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 4765577..4775999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2I28_RS24330 (C2I28_24185) - 4765929..4766762 (-) 834 WP_099000376.1 AraC family transcriptional regulator -
  C2I28_RS24335 (C2I28_24190) - 4766965..4767786 (+) 822 WP_028414492.1 sensor histidine kinase -
  C2I28_RS24340 (C2I28_24195) - 4767787..4768428 (+) 642 WP_028414493.1 response regulator transcription factor -
  C2I28_RS24345 (C2I28_24200) - 4768563..4769942 (+) 1380 WP_108674789.1 PepSY domain-containing protein -
  C2I28_RS24350 (C2I28_24205) - 4769972..4770436 (+) 465 WP_099000378.1 FixH family protein -
  C2I28_RS24355 (C2I28_24210) nucA/comI 4770577..4770999 (+) 423 WP_099000379.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  C2I28_RS24360 (C2I28_24215) - 4771154..4771507 (+) 354 WP_223272376.1 DUF1516 family protein -
  C2I28_RS24365 (C2I28_24220) - 4771548..4772141 (-) 594 WP_028414498.1 hypothetical protein -
  C2I28_RS24370 (C2I28_24225) - 4772294..4772950 (-) 657 WP_028414499.1 TetR/AcrR family transcriptional regulator -
  C2I28_RS24375 (C2I28_24230) - 4772973..4774250 (-) 1278 WP_099000380.1 glycosyltransferase -
  C2I28_RS24380 (C2I28_24235) - 4774583..4775068 (-) 486 WP_108674790.1 hypothetical protein -
  C2I28_RS24385 (C2I28_24240) fsa 4775147..4775815 (-) 669 WP_099000382.1 fructose-6-phosphate aldolase -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 15316.09 Da        Isoelectric Point: 4.3538

>NTDB_id=272083 C2I28_RS24355 WP_099000379.1 4770577..4770999(+) (nucA/comI) [Priestia megaterium strain YC4-R4]
MKKIVSGILILVIAVIVMIEGNPLEQNSSTNTSYDEVISFPADRYPETAAHIQHAIDKGKSAVCTIDRDGAEENRRESLK
GIPTESGYDRDEFPMAFCEEGGSGADIEYVKPSDNRGAGSWISHQVDEFPDGTKVLIEVK

Nucleotide


Download         Length: 423 bp        

>NTDB_id=272083 C2I28_RS24355 WP_099000379.1 4770577..4770999(+) (nucA/comI) [Priestia megaterium strain YC4-R4]
TTGAAAAAAATTGTTTCTGGTATTTTAATTTTAGTAATAGCCGTTATTGTTATGATTGAAGGAAATCCGTTAGAGCAGAA
CTCTTCAACGAATACCTCCTACGATGAAGTCATTTCCTTCCCTGCTGATCGTTACCCTGAAACTGCAGCGCACATTCAAC
ATGCAATCGATAAAGGAAAATCGGCTGTTTGTACAATCGATCGAGACGGTGCTGAAGAAAACCGCCGTGAGTCTTTAAAA
GGCATTCCGACTGAAAGCGGCTATGACCGAGATGAGTTTCCGATGGCCTTTTGTGAAGAAGGCGGAAGCGGTGCAGATAT
TGAATATGTAAAGCCTTCAGACAACCGAGGCGCCGGGTCTTGGATTTCACATCAAGTAGATGAGTTTCCAGACGGTACGA
AGGTTTTAATTGAAGTGAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(44-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

60.345

82.857

0.5

Multiple sequence alignment