Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   D1105_RS05565 Genome accession   NZ_CP031862
Coordinates   1256027..1256659 (+) Length   210 a.a.
NCBI ID   WP_005601574.1    Uniprot ID   B3GXZ4
Organism   Actinobacillus pleuropneumoniae strain 8329     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1251027..1261659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1105_RS05550 (D1105_05575) - 1251208..1251399 (-) 192 WP_012263101.1 hypothetical protein -
  D1105_RS10670 - 1251454..1251582 (-) 129 WP_005619459.1 hypothetical protein -
  D1105_RS05555 (D1105_05580) purT 1252102..1253283 (-) 1182 WP_005615456.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  D1105_RS05560 (D1105_05585) plsB 1253396..1255870 (-) 2475 WP_005615458.1 glycerol-3-phosphate 1-O-acyltransferase PlsB -
  D1105_RS05565 (D1105_05590) dinR/lexA 1256027..1256659 (+) 633 WP_005601574.1 transcriptional repressor LexA Regulator
  D1105_RS05570 (D1105_05595) mutH 1256719..1257399 (+) 681 WP_005601576.1 DNA mismatch repair endonuclease MutH -
  D1105_RS05575 (D1105_05600) - 1257485..1258216 (+) 732 WP_005597990.1 TerC family protein -
  D1105_RS05580 (D1105_05605) nagZ 1258331..1259368 (+) 1038 WP_043995334.1 beta-N-acetylhexosaminidase -
  D1105_RS05585 (D1105_05610) rlmC 1259449..1260624 (+) 1176 WP_005601582.1 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23354.73 Da        Isoelectric Point: 5.8460

>NTDB_id=272072 D1105_RS05565 WP_005601574.1 1256027..1256659(+) (dinR/lexA) [Actinobacillus pleuropneumoniae strain 8329]
MSRKHLTARQQEIFDFVKHHIETTGMPPTRVEIAREIGFKSPNAAEEHLKALARKGYIEMLSGTSRGIRILVDNEETAAN
DDGLPLIGKVAAGTPIMAIEHVESHYPVNGAMFNPNADYLLKVNGNSMEKIGILDGDLLAVHKTNFARNGQVVVARVDDE
VTVKRLEKKGDLIYLHPENDELQPIVVDPRIEYIEIEGIAVGVIRNNAWM

Nucleotide


Download         Length: 633 bp        

>NTDB_id=272072 D1105_RS05565 WP_005601574.1 1256027..1256659(+) (dinR/lexA) [Actinobacillus pleuropneumoniae strain 8329]
ATGTCACGTAAACACTTAACGGCTCGTCAGCAAGAAATTTTCGATTTTGTTAAACATCACATAGAAACCACCGGTATGCC
GCCGACCCGTGTTGAAATTGCAAGAGAAATCGGTTTTAAATCGCCGAATGCGGCAGAAGAACACTTAAAAGCATTGGCGC
GTAAAGGTTATATCGAAATGCTTTCCGGTACATCGCGCGGAATTCGTATTTTAGTCGATAACGAAGAAACTGCGGCAAAT
GACGACGGTTTACCGTTAATCGGCAAAGTGGCTGCCGGTACGCCGATTATGGCGATTGAACATGTGGAAAGTCATTATCC
GGTAAACGGCGCGATGTTTAATCCGAATGCCGACTATTTGCTCAAAGTAAACGGTAACTCCATGGAAAAAATCGGTATTT
TAGACGGTGACTTACTTGCGGTGCATAAAACCAATTTTGCCCGTAACGGCCAAGTCGTCGTCGCTCGCGTTGATGACGAA
GTGACGGTAAAACGCTTGGAGAAAAAAGGCGATCTTATTTATCTTCATCCTGAAAATGACGAGTTACAACCGATTGTTGT
TGATCCTCGTATCGAATATATCGAAATTGAAGGAATCGCCGTCGGTGTAATTCGCAATAATGCTTGGATGTAA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(4-67)

Peptidase S24-like (Peptidase_S24)

(85-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B3GXZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

37.379

98.095

0.367