Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   ECE24377A_RS04060 Genome accession   NC_009801
Coordinates   529552..530157 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli O139:H28 str. E24377A     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 524552..535157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECE24377A_RS31305 (EcE24377A_0501) - 525106..525204 (+) 99 Protein_460 hypothetical protein -
  ECE24377A_RS04030 (EcE24377A_0502) rsmS 525257..525418 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  ECE24377A_RS04035 (EcE24377A_0503) priC 525432..525959 (-) 528 WP_000844874.1 primosomal replication protein N'' -
  ECE24377A_RS04040 (EcE24377A_0504) ybaN 526029..526406 (+) 378 WP_001188905.1 DUF454 family protein -
  ECE24377A_RS04045 (EcE24377A_0506) apt 526559..527110 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  ECE24377A_RS04050 (EcE24377A_0507) dnaX 527239..529170 (+) 1932 WP_000122005.1 DNA polymerase III subunit gamma/tau -
  ECE24377A_RS04055 (EcE24377A_0509) ybaB 529223..529552 (+) 330 WP_012000942.1 YbaB/EbfC family nucleoid-associated protein -
  ECE24377A_RS04060 (EcE24377A_0510) recR 529552..530157 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  ECE24377A_RS04065 (EcE24377A_0511) htpG 530267..532141 (+) 1875 WP_000678208.1 molecular chaperone HtpG -
  ECE24377A_RS04070 (EcE24377A_0513) adk 532322..532966 (+) 645 WP_001220233.1 adenylate kinase -
  ECE24377A_RS04075 (EcE24377A_0515) hemH 533202..534164 (+) 963 WP_001250093.1 ferrochelatase -
  ECE24377A_RS04080 (EcE24377A_0514) aes 534161..535120 (-) 960 WP_000801847.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=27206 ECE24377A_RS04060 WP_001195025.1 529552..530157(+) (recR) [Escherichia coli O139:H28 str. E24377A]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=27206 ECE24377A_RS04060 WP_001195025.1 529552..530157(+) (recR) [Escherichia coli O139:H28 str. E24377A]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment