Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   C2I28_RS03890 Genome accession   NZ_CP026736
Coordinates   756429..758156 (-) Length   575 a.a.
NCBI ID   WP_028411588.1    Uniprot ID   A0AAX6BQB3
Organism   Priestia megaterium strain YC4-R4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 751429..763156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2I28_RS03870 (C2I28_03800) - 751782..751934 (+) 153 WP_064504589.1 YycC family protein -
  C2I28_RS03875 (C2I28_03805) - 752248..753579 (+) 1332 WP_028411586.1 peptide MFS transporter -
  C2I28_RS03880 (C2I28_03810) spo0A 753950..754738 (-) 789 WP_013084985.1 sporulation transcription factor Spo0A -
  C2I28_RS03885 (C2I28_03815) spoIVB 754966..756246 (-) 1281 WP_028411587.1 SpoIVB peptidase -
  C2I28_RS03890 (C2I28_03820) recN 756429..758156 (-) 1728 WP_028411588.1 DNA repair protein RecN Machinery gene
  C2I28_RS03895 (C2I28_03825) ahrC 758173..758622 (-) 450 WP_013059136.1 transcriptional regulator AhrC/ArgR -
  C2I28_RS03900 (C2I28_03830) - 758784..759611 (-) 828 WP_099331282.1 TlyA family RNA methyltransferase -
  C2I28_RS03905 (C2I28_03835) dxs 759608..761509 (-) 1902 WP_028411590.1 1-deoxy-D-xylulose-5-phosphate synthase -
  C2I28_RS03910 (C2I28_03840) - 761830..762726 (-) 897 WP_099331283.1 polyprenyl synthetase family protein -
  C2I28_RS03915 (C2I28_03845) - 762726..762959 (-) 234 WP_013059140.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 575 a.a.        Molecular weight: 64683.23 Da        Isoelectric Point: 4.7963

>NTDB_id=272035 C2I28_RS03890 WP_028411588.1 756429..758156(-) (recN) [Priestia megaterium strain YC4-R4]
MLAELSIKNFAIIDELSVSFEKGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRHGTDRAEIEGLFLFDEEQHPSHEK
AKQVGLEVEDGMIVLRRDITTNGKSICRINGKLVTLAILREVGQTLIDIHGQHEHQDLMNQDRHLTLLDQYGGEKVEEAL
TEYREVFSRYTSLKKQLDQLTENEQQMAHRLDLIQFQLDEIKAANLQLNEDEELNEERLKISNFEKIYTSLNDAYNALHG
EHQGLDWVGVAMNHTEDISSLEKNYAEISEIISSSFYQLEDASYKIRQQLDLLEFDPKRLDFIEARLNEINHLKRKYGQS
VDEILEYAAQIEDEIDRIENRDTHVSKIKEQLNSVAQDLLVEANNVSAIRKKLAQELTDSIHHELQELYMAKTVFQIKFS
VVNAGKNDVEVNGERIKFTKDGIDNVEFYISTNPGEPLKPLAKVASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVS
GRVAQSIGEKIHAISVDSQVLCISHLPQVAAMADTHLFIAKEIKGDRTTTSVLPLTLDEKVKEIGRMIAGAEITSLTKEH
AKELLDLADKMKQTI

Nucleotide


Download         Length: 1728 bp        

>NTDB_id=272035 C2I28_RS03890 WP_028411588.1 756429..758156(-) (recN) [Priestia megaterium strain YC4-R4]
TTGTTAGCTGAATTATCCATTAAAAACTTTGCGATTATTGATGAACTTTCTGTTTCATTTGAAAAAGGCTTAACGGTATT
AACAGGCGAAACAGGAGCGGGAAAGTCGATTATTATTGATGCCATTTCATTGTTAGTAGGTGGAAGAGGCTCTTCGGAGT
TTGTCCGCCATGGAACAGACAGAGCCGAAATTGAAGGGCTTTTCTTATTTGATGAAGAACAGCATCCGAGTCACGAAAAA
GCCAAACAAGTCGGTTTGGAAGTGGAAGATGGAATGATTGTGCTTCGCCGAGATATCACTACAAATGGGAAAAGTATTTG
CCGCATCAACGGTAAGCTCGTCACGTTAGCTATCCTACGTGAAGTCGGACAGACGTTAATTGATATACATGGACAGCACG
AGCACCAAGATTTAATGAATCAAGATCGTCACTTAACTCTTCTTGATCAATATGGAGGAGAAAAAGTAGAAGAGGCTTTG
ACGGAGTATCGAGAGGTATTTTCGAGGTATACGTCGCTAAAAAAGCAGTTGGATCAATTAACTGAAAATGAGCAGCAGAT
GGCACATCGCCTCGATCTTATTCAATTTCAATTAGATGAAATCAAAGCCGCAAATTTGCAGCTCAATGAAGACGAGGAAC
TAAATGAAGAGCGTTTGAAGATTTCCAACTTTGAAAAGATCTATACGTCGCTAAACGATGCGTACAATGCGCTGCACGGT
GAACATCAAGGTCTGGATTGGGTAGGCGTAGCAATGAATCATACGGAGGATATTTCGTCACTGGAAAAAAACTATGCCGA
AATTTCGGAGATTATTTCATCGAGCTTCTATCAGTTAGAAGACGCATCTTATAAAATTCGTCAGCAGCTGGATTTATTAG
AATTTGATCCGAAACGCTTAGACTTTATTGAAGCGCGTTTAAATGAAATTAATCACTTAAAGCGTAAATACGGTCAAAGT
GTAGATGAAATTCTAGAATATGCAGCACAAATTGAAGATGAAATTGATCGTATTGAAAATCGAGATACGCACGTGAGCAA
GATCAAAGAACAGTTAAACAGCGTAGCACAGGATTTATTAGTAGAAGCTAACAACGTTTCAGCTATTCGAAAAAAACTTG
CTCAGGAGTTAACGGACAGCATCCATCATGAGCTTCAAGAACTCTATATGGCTAAAACCGTATTTCAAATTAAATTCTCT
GTCGTAAATGCAGGTAAAAATGACGTTGAAGTAAATGGCGAAAGAATAAAATTCACCAAAGACGGCATTGACAACGTAGA
GTTTTATATTTCTACCAACCCTGGTGAACCGTTAAAGCCTCTTGCGAAAGTAGCATCAGGCGGAGAACTGTCAAGGATCA
TGCTGGCGTTAAAGAGCATCTTCTCTAAGCATCAAGGCGTGACGTCCATTATCTTTGATGAAGTTGATACAGGCGTAAGT
GGAAGAGTAGCTCAATCGATCGGTGAAAAAATACATGCCATTTCCGTTGATTCGCAGGTTCTTTGCATATCTCATTTGCC
GCAGGTAGCAGCTATGGCAGATACTCATCTCTTTATTGCTAAAGAGATAAAAGGTGATCGTACAACGACATCTGTTCTTC
CATTAACTCTTGATGAAAAAGTAAAAGAAATTGGTCGAATGATTGCAGGAGCTGAAATTACAAGCTTAACGAAGGAGCAT
GCCAAAGAGCTTTTAGATTTAGCGGATAAGATGAAGCAGACCATTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

64.931

100

0.65

Multiple sequence alignment