Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   D1106_RS05805 Genome accession   NZ_CP031861
Coordinates   1286976..1287608 (+) Length   210 a.a.
NCBI ID   WP_005601574.1    Uniprot ID   B3GXZ4
Organism   Actinobacillus pleuropneumoniae strain N 273     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1281976..1292608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1106_RS05795 (D1106_05835) purT 1283041..1284222 (-) 1182 WP_005597983.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  D1106_RS05800 (D1106_05840) plsB 1284345..1286819 (-) 2475 WP_005601572.1 glycerol-3-phosphate 1-O-acyltransferase PlsB -
  D1106_RS05805 (D1106_05845) dinR/lexA 1286976..1287608 (+) 633 WP_005601574.1 transcriptional repressor LexA Regulator
  D1106_RS05810 (D1106_05850) mutH 1287668..1288348 (+) 681 WP_005610420.1 DNA mismatch repair endonuclease MutH -
  D1106_RS05815 (D1106_05855) - 1288434..1289165 (+) 732 WP_005597990.1 TerC family protein -
  D1106_RS05820 (D1106_05860) nagZ 1289280..1290317 (+) 1038 WP_011848533.1 beta-N-acetylhexosaminidase -
  D1106_RS05825 (D1106_05865) rlmC 1290398..1291573 (+) 1176 WP_237593696.1 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23354.73 Da        Isoelectric Point: 5.8460

>NTDB_id=272018 D1106_RS05805 WP_005601574.1 1286976..1287608(+) (dinR/lexA) [Actinobacillus pleuropneumoniae strain N 273]
MSRKHLTARQQEIFDFVKHHIETTGMPPTRVEIAREIGFKSPNAAEEHLKALARKGYIEMLSGTSRGIRILVDNEETAAN
DDGLPLIGKVAAGTPIMAIEHVESHYPVNGAMFNPNADYLLKVNGNSMEKIGILDGDLLAVHKTNFARNGQVVVARVDDE
VTVKRLEKKGDLIYLHPENDELQPIVVDPRIEYIEIEGIAVGVIRNNAWM

Nucleotide


Download         Length: 633 bp        

>NTDB_id=272018 D1106_RS05805 WP_005601574.1 1286976..1287608(+) (dinR/lexA) [Actinobacillus pleuropneumoniae strain N 273]
ATGTCACGTAAACACTTAACGGCTCGTCAGCAAGAAATTTTTGATTTTGTTAAACATCACATAGAAACCACCGGTATGCC
GCCGACCCGTGTTGAAATTGCAAGAGAAATCGGTTTTAAATCGCCGAATGCGGCAGAAGAACACTTAAAAGCATTGGCGC
GTAAAGGTTATATCGAAATGCTTTCCGGTACATCGCGCGGAATTCGTATTTTAGTCGATAACGAAGAAACTGCGGCAAAT
GACGATGGTTTACCGTTAATCGGCAAAGTGGCTGCCGGTACGCCGATTATGGCGATTGAACATGTGGAAAGTCATTATCC
GGTAAACGGCGCGATGTTTAATCCGAATGCCGACTATTTGCTCAAAGTAAACGGTAACTCCATGGAAAAAATCGGTATTT
TAGACGGTGACTTACTTGCGGTGCATAAAACCAATTTTGCCCGTAACGGCCAAGTCGTCGTCGCTCGCGTTGATGACGAA
GTGACGGTAAAACGCTTGGAGAAAAAAGGCGACCTTATTTATCTTCATCCTGAAAATGACGAGTTACAACCGATTGTTGT
TGATCCTCGTATCGAATATATCGAAATTGAAGGAATCGCCGTCGGTGTAATTCGCAATAATGCTTGGATGTAA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(4-67)

Peptidase S24-like (Peptidase_S24)

(85-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B3GXZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

37.379

98.095

0.367

Multiple sequence alignment