Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   BKKJ1_RS00520 Genome accession   NZ_CP026729
Coordinates   140194..142038 (+) Length   614 a.a.
NCBI ID   WP_154303393.1    Uniprot ID   -
Organism   Bifidobacterium catenulatum subsp. kashiwanohense strain APCKJ1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 135194..147038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKKJ1_RS00500 (BKKJ1_0094) thiS 135796..135990 (-) 195 WP_003833700.1 sulfur carrier protein ThiS -
  BKKJ1_RS00505 (BKKJ1_0095) - 136546..137619 (+) 1074 WP_193564502.1 aldo/keto reductase -
  BKKJ1_RS00510 (BKKJ1_0096) - 137830..138321 (+) 492 WP_033512754.1 MarR family winged helix-turn-helix transcriptional regulator -
  BKKJ1_RS00515 (BKKJ1_0097) rcrP 138428..140179 (+) 1752 WP_154303392.1 ABC transporter ATP-binding protein Regulator
  BKKJ1_RS00520 (BKKJ1_0098) rcrQ 140194..142038 (+) 1845 WP_154303393.1 ABC transporter ATP-binding protein Regulator
  BKKJ1_RS00525 (BKKJ1_0099) - 142286..143266 (+) 981 WP_033500642.1 aldo/keto reductase -
  BKKJ1_RS00530 (BKKJ1_0100) - 143522..144586 (-) 1065 WP_154303394.1 FAD:protein FMN transferase -
  BKKJ1_RS00535 (BKKJ1_0101) - 145336..147030 (+) 1695 WP_154304354.1 FTR1 family iron permease -

Sequence

Protein


Download         Length: 614 a.a.        Molecular weight: 67452.22 Da        Isoelectric Point: 6.1462

>NTDB_id=272005 BKKJ1_RS00520 WP_154303393.1 140194..142038(+) (rcrQ) [Bifidobacterium catenulatum subsp. kashiwanohense strain APCKJ1]
MARGPMGRSRGPVEKPKDFGGVMSKLAKFCRHYIPVMIFALILGAAGTICQIVGPDKLKDMTNEITKGLPAMVHGRPVMN
SIDMDAVSRIAWLLVALYVGYALLSYLQSWLMANVTQRTAQELREAISKKINRLPLKYFDKVSYGDVLSRITNDVDAIGQ
TLGQSVGSLITSITLFVGALIMMFYNNVIMTLCAIGSALLGLVVMGVIMVASQKYFTRQQIALGDVNGHVEEMYTGHTVV
KAYCGEEDSIEQFEKYNDDLYVSGWKSQFLSGLMMPLMNFIGNFGYVVVCVVGAVLAMDGKIEFGVIVAFMMYIRLFTQP
LAQFAQAFQNLQRCAAASERVFGFLEEPELADESGKKALLGVGVDGKPQPVRGDVEFSHVRFGYDPDKTIIHDFSASVKA
GQKVAIVGPTGAGKTTMVNLLMRFYEISGGTISIDGVDTKSVPRWNVHDQFSMVLQDTWVFRGTVRENIAYSKPGVTDEQ
IVAACKAVGLHRYIMSLPNGYDTVLDDKASLSQGQKQLLTIARAMVEDAPILILDEATSSVDTRTEELIQKAMDALTVGH
TSFVIAHRLSTIRDADMILVMNGGDIVERGTHEELLARNGFYADIYNSQFTLID

Nucleotide


Download         Length: 1845 bp        

>NTDB_id=272005 BKKJ1_RS00520 WP_154303393.1 140194..142038(+) (rcrQ) [Bifidobacterium catenulatum subsp. kashiwanohense strain APCKJ1]
ATGGCAAGAGGACCGATGGGACGCTCTCGCGGACCCGTGGAAAAGCCGAAGGATTTCGGCGGTGTGATGAGCAAACTGGC
GAAATTCTGCCGTCACTACATTCCTGTGATGATTTTCGCCCTGATTCTGGGTGCAGCTGGCACGATCTGCCAGATTGTCG
GACCGGACAAGCTCAAAGACATGACCAACGAGATCACGAAGGGGCTGCCGGCCATGGTGCATGGCAGGCCGGTCATGAAC
TCGATCGATATGGATGCTGTCTCGCGCATCGCATGGCTGCTTGTCGCGCTGTATGTTGGGTACGCGCTGCTGAGTTACCT
GCAGAGCTGGTTGATGGCCAACGTTACGCAGCGCACCGCGCAGGAGCTGCGTGAGGCGATCAGCAAGAAGATTAATCGCC
TGCCGCTCAAATATTTCGACAAGGTCAGCTACGGCGATGTGCTCAGCCGCATCACCAACGATGTGGACGCGATCGGCCAG
ACGCTCGGCCAGTCGGTCGGCTCGCTGATCACTTCAATCACGCTGTTCGTCGGCGCGCTTATCATGATGTTTTACAACAA
CGTGATCATGACGCTGTGCGCCATCGGTTCCGCGTTGCTTGGCCTGGTGGTCATGGGCGTGATCATGGTCGCCTCGCAGA
AGTACTTCACCCGACAGCAGATCGCATTGGGAGATGTGAACGGGCACGTTGAGGAAATGTACACCGGCCACACCGTGGTC
AAGGCATACTGCGGCGAAGAGGACTCCATCGAACAGTTCGAGAAGTACAACGATGATCTGTACGTCTCCGGCTGGAAGAG
TCAGTTCCTCTCCGGCCTGATGATGCCGCTCATGAACTTCATCGGCAACTTCGGTTACGTGGTCGTGTGCGTGGTCGGCG
CGGTGCTGGCCATGGACGGCAAGATCGAATTCGGCGTGATCGTGGCGTTCATGATGTACATTCGCCTGTTCACGCAACCG
CTTGCCCAGTTCGCGCAGGCGTTCCAGAACCTGCAGCGCTGCGCTGCCGCCTCCGAACGCGTCTTCGGTTTCCTGGAAGA
GCCGGAGCTGGCCGACGAATCCGGCAAGAAAGCACTGCTGGGTGTCGGTGTGGATGGCAAGCCGCAGCCGGTGCGTGGCG
ATGTGGAATTCAGTCACGTGCGGTTCGGCTACGACCCGGACAAGACGATCATCCACGACTTCTCCGCGTCGGTGAAGGCC
GGCCAGAAGGTGGCCATCGTCGGCCCGACCGGTGCCGGTAAGACCACGATGGTCAATCTGCTGATGCGGTTCTACGAGAT
TTCCGGCGGCACGATTTCGATCGACGGCGTCGACACCAAGTCAGTTCCGCGCTGGAATGTGCACGACCAGTTCTCGATGG
TATTGCAGGACACGTGGGTGTTCCGTGGAACGGTGCGTGAAAACATCGCATACTCGAAGCCGGGCGTCACTGACGAGCAG
ATTGTAGCCGCCTGCAAAGCCGTCGGTCTGCACCGCTACATCATGTCTCTGCCGAATGGCTACGACACTGTGCTCGACGA
CAAGGCGTCGCTTTCGCAAGGTCAGAAGCAGCTGCTGACAATTGCCCGCGCCATGGTTGAGGACGCGCCGATTCTGATTC
TAGATGAGGCCACGTCCTCTGTGGATACCCGTACCGAGGAGTTGATTCAGAAGGCCATGGACGCACTGACGGTGGGACAC
ACGAGCTTCGTGATCGCGCACCGACTGTCCACCATTCGCGACGCCGACATGATTTTGGTGATGAACGGCGGCGACATTGT
GGAACGCGGCACCCACGAGGAACTGCTCGCTAGAAACGGCTTCTACGCCGACATCTATAACAGCCAGTTCACGCTGATCG
ACTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(38-321)

ABC transporter (ABC_tran)

(392-539)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

55.668

96.254

0.536

Multiple sequence alignment