Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   BKKJ1_RS00515 Genome accession   NZ_CP026729
Coordinates   138428..140179 (+) Length   583 a.a.
NCBI ID   WP_154303392.1    Uniprot ID   -
Organism   Bifidobacterium catenulatum subsp. kashiwanohense strain APCKJ1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 133428..145179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKKJ1_RS00490 (BKKJ1_0092) - 133957..134871 (-) 915 WP_081962245.1 thiazole synthase -
  BKKJ1_RS00495 (BKKJ1_0093) thiF 134955..135668 (-) 714 WP_033500638.1 sulfur carrier protein ThiS adenylyltransferase ThiF -
  BKKJ1_RS00500 (BKKJ1_0094) thiS 135796..135990 (-) 195 WP_003833700.1 sulfur carrier protein ThiS -
  BKKJ1_RS00505 (BKKJ1_0095) - 136546..137619 (+) 1074 WP_193564502.1 aldo/keto reductase -
  BKKJ1_RS00510 (BKKJ1_0096) - 137830..138321 (+) 492 WP_033512754.1 MarR family winged helix-turn-helix transcriptional regulator -
  BKKJ1_RS00515 (BKKJ1_0097) rcrP 138428..140179 (+) 1752 WP_154303392.1 ABC transporter ATP-binding protein Regulator
  BKKJ1_RS00520 (BKKJ1_0098) rcrQ 140194..142038 (+) 1845 WP_154303393.1 ABC transporter ATP-binding protein Regulator
  BKKJ1_RS00525 (BKKJ1_0099) - 142286..143266 (+) 981 WP_033500642.1 aldo/keto reductase -
  BKKJ1_RS00530 (BKKJ1_0100) - 143522..144586 (-) 1065 WP_154303394.1 FAD:protein FMN transferase -

Sequence

Protein


Download         Length: 583 a.a.        Molecular weight: 64452.51 Da        Isoelectric Point: 5.0988

>NTDB_id=272004 BKKJ1_RS00515 WP_154303392.1 138428..140179(+) (rcrP) [Bifidobacterium catenulatum subsp. kashiwanohense strain APCKJ1]
MLRIVRYLSKAEIVQMLIALVSIVGQIWFDLTLPDYMADITQLVETPGSEMSDIWIAGGKMLLVSLGSVACAVVTGFIAA
RVGASFSQRLRSLEFKKVESFGPAEMNRFSTASLITRSTNDITQIQMFVTMGLMMLVKAPIMAVWAVCKIANKGLEWTFA
TGIAVAVLLAVISVIMSFVMPKFKAMQRLTDNINLVARENLTGLRVVRAYNAEEYQEDKFTEANKELTETQLFTNRSMAI
MMPLMNTVMNGLMLAVYWIGAYLIDAAEALDKLTTFSNMVVFSSYSIQVIMSFLLLSMVFVLWPRADVSAQRVLEVIDTD
PMVADGVKTAGKPGVEGEIEFRNVSFAYPDSRQAMLEGVNFTAKKGETVAFIGSTGSGKSSLINLVPRFYDATQGEVLVD
GVNVRDYTLKALRDKIGYVPQQSFLFKGTIASNVAYGDTERNDADVKTACEVAQATEFIDKKDKKYDSSISQGGSNVSGG
QKQRLSIARAVYRHPEILIFDDSFSALDFKTDRAVRDALEREAKDSTKLIVAQRIGTIMNADRIIVLDDGKVVGQGTHHE
LLDNCEVYRQIAESQLSEDELNR

Nucleotide


Download         Length: 1752 bp        

>NTDB_id=272004 BKKJ1_RS00515 WP_154303392.1 138428..140179(+) (rcrP) [Bifidobacterium catenulatum subsp. kashiwanohense strain APCKJ1]
ATGCTTCGCATTGTGCGATACCTCTCCAAAGCGGAGATAGTCCAGATGCTCATTGCACTGGTCAGCATCGTCGGTCAGAT
CTGGTTCGATCTGACGCTACCGGATTACATGGCCGACATCACGCAGCTCGTGGAAACGCCGGGCAGTGAAATGAGTGATA
TCTGGATAGCGGGCGGCAAAATGCTGCTCGTCTCGCTCGGATCGGTGGCGTGCGCGGTCGTCACCGGCTTCATCGCCGCG
CGCGTCGGCGCGTCATTCAGCCAACGTCTGCGCTCGCTCGAATTCAAGAAGGTGGAAAGCTTCGGACCGGCGGAAATGAA
CCGTTTCTCCACCGCATCGCTCATCACCCGCTCCACGAACGACATCACGCAGATCCAGATGTTCGTGACCATGGGTCTGA
TGATGCTGGTCAAAGCGCCGATCATGGCCGTGTGGGCCGTGTGCAAAATCGCGAACAAAGGCCTTGAATGGACGTTCGCC
ACCGGCATCGCAGTAGCCGTGCTGTTGGCGGTGATCAGCGTGATCATGAGCTTCGTCATGCCGAAGTTCAAGGCCATGCA
GCGCCTGACCGACAATATCAACCTCGTGGCGCGCGAGAACCTCACCGGCCTGCGCGTGGTGCGCGCATACAACGCCGAGG
AGTACCAGGAAGACAAGTTCACCGAGGCCAACAAGGAACTTACCGAGACCCAGCTGTTCACCAACCGTTCCATGGCCATC
ATGATGCCGTTGATGAACACCGTCATGAACGGTCTGATGCTGGCCGTCTACTGGATCGGCGCCTACCTCATCGACGCCGC
CGAAGCGCTCGACAAGCTCACCACCTTCTCCAACATGGTGGTGTTCTCCAGCTACTCCATCCAGGTGATCATGAGCTTCC
TGCTGCTGAGCATGGTGTTCGTGCTTTGGCCGCGCGCCGACGTGTCCGCGCAGCGCGTGCTCGAAGTCATCGACACCGAT
CCGATGGTCGCCGACGGTGTGAAGACCGCCGGCAAGCCTGGCGTGGAAGGCGAAATCGAATTCCGCAACGTGAGCTTCGC
CTACCCCGATTCGCGTCAAGCCATGTTGGAAGGCGTCAATTTCACAGCCAAGAAGGGCGAAACGGTCGCATTCATCGGCT
CGACCGGCTCCGGAAAATCGTCTCTCATCAACCTCGTGCCGCGCTTCTATGACGCGACGCAAGGCGAGGTGCTCGTCGAC
GGCGTCAACGTGCGCGACTACACGCTCAAGGCGTTGCGTGACAAGATCGGCTATGTGCCGCAGCAGTCGTTCCTGTTCAA
GGGCACGATCGCCAGCAACGTCGCCTACGGAGATACGGAACGCAACGATGCCGACGTGAAGACGGCATGCGAAGTCGCGC
AGGCCACGGAATTCATCGACAAGAAGGACAAGAAATACGATTCCAGCATTTCGCAGGGCGGCTCCAACGTGTCGGGCGGG
CAGAAACAGCGCCTGTCGATCGCACGCGCCGTCTACCGCCATCCGGAAATCCTGATTTTCGACGACTCCTTCTCCGCGCT
TGATTTCAAGACCGATCGCGCCGTACGCGACGCGCTCGAACGGGAAGCGAAGGATTCCACGAAACTCATCGTCGCGCAGC
GCATCGGCACCATTATGAACGCCGACCGCATCATCGTGCTCGACGACGGCAAAGTCGTTGGTCAAGGCACGCACCACGAA
CTGCTCGACAACTGCGAAGTATACCGGCAGATCGCCGAATCGCAGTTGAGCGAAGACGAGTTGAATCGCTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(356-503)

ABC transporter transmembrane region (ABC_membrane)

(17-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

50.168

100

0.513

Multiple sequence alignment