Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C4R22_RS25585 Genome accession   NZ_CP026723
Coordinates   4993586..4994215 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 266917_2     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4988586..4999215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4R22_RS25560 ycbZ 4988976..4990736 (-) 1761 WP_000156479.1 Lon protease family protein -
  C4R22_RS25565 matP 4990922..4991374 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  C4R22_RS25570 ompA 4991449..4992501 (-) 1053 WP_000750418.1 porin OmpA -
  C4R22_RS25580 sulA 4992858..4993367 (-) 510 WP_000288704.1 SOS-induced cell division inhibitor SulA -
  C4R22_RS25585 sxy/tfoX 4993586..4994215 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  C4R22_RS25590 yccS 4994178..4996340 (-) 2163 WP_001550920.1 YccS family putative transporter -
  C4R22_RS25595 yccF 4996350..4996796 (-) 447 WP_001261235.1 YccF domain-containing protein -
  C4R22_RS25600 helD 4996919..4998973 (+) 2055 WP_001550921.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=272003 C4R22_RS25585 WP_000839153.1 4993586..4994215(+) (sxy/tfoX) [Escherichia coli strain 266917_2]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=272003 C4R22_RS25585 WP_000839153.1 4993586..4994215(+) (sxy/tfoX) [Escherichia coli strain 266917_2]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment