Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   D1106_RS03590 Genome accession   NZ_CP031861
Coordinates   772906..774450 (-) Length   514 a.a.
NCBI ID   WP_237594209.1    Uniprot ID   -
Organism   Actinobacillus pleuropneumoniae strain N 273     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 767906..779450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1106_RS03565 (D1106_03580) efeO 768790..769602 (+) 813 WP_117374109.1 iron uptake system protein EfeO -
  D1106_RS03570 (D1106_03585) efeB 769614..770807 (+) 1194 WP_009874702.1 iron uptake transporter deferrochelatase/peroxidase subunit -
  D1106_RS03575 (D1106_03590) - 770818..771438 (+) 621 WP_237594207.1 Fe2+/Pb2+ permease -
  D1106_RS03580 (D1106_03595) - 771477..772295 (-) 819 WP_237594208.1 PHP domain-containing protein -
  D1106_RS03585 (D1106_03600) - 772299..772889 (-) 591 WP_237593026.1 DNA glycosylase -
  D1106_RS03590 (D1106_03605) sbcB 772906..774450 (-) 1545 WP_237594209.1 exodeoxyribonuclease I Machinery gene
  D1106_RS03595 (D1106_03610) - 774692..776095 (-) 1404 WP_237594210.1 chloride channel protein -
  D1106_RS03600 (D1106_03615) asnS 776303..777706 (+) 1404 WP_215577556.1 asparagine--tRNA ligase -
  D1106_RS03605 (D1106_03620) epmB 777808..778809 (-) 1002 WP_237594211.1 EF-P beta-lysylation protein EpmB -

Sequence

Protein


Download         Length: 514 a.a.        Molecular weight: 58408.50 Da        Isoelectric Point: 5.6337

>NTDB_id=272003 D1106_RS03590 WP_237594209.1 772906..774450(-) (sbcB) [Actinobacillus pleuropneumoniae strain N 273]
MNKNLTFFFYDYESFGVSPALDRPAQFAGIRTDSDFNIIGEPVMFYCKQTPDYLPSPEAVMVTGITPQQCNAEGVPEPEF
AARIHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFFDPYEYSWKNGNSRWDLLDLVRACYALRPDGIEWVIDENGVPNF
KLENLTKANGIAHENAHDAMADVYATIAMAKLIKQKQPKLFQFFFENRGKKEIEKMIDTGEMTPLVHVSGMFGNARANTA
WIAPIAWHPTNQNQVLCCDLSGDVSALLTDSAEELRTRLYTKKEELAEGVAPVPLKGVHINRCPIIAPAKVLLPENAARL
GIDRERCLENLKLLKANKSLVREKVTEIFMEERSFEPSANVETTLYDGFFSPADKNNMAILRTLPPQELAHHGLQFADER
VEALLFHYRARHYPETLSRAEQIKWQKYCHQQIDAKSAQFAEAIDSLFQIHHDNPEKVKLLENLTAYAAQIAEFQVVKHT
ANAQSEQLVSALNQVAEQGMDKAAKLEMLKALIK

Nucleotide


Download         Length: 1545 bp        

>NTDB_id=272003 D1106_RS03590 WP_237594209.1 772906..774450(-) (sbcB) [Actinobacillus pleuropneumoniae strain N 273]
ATGAATAAAAATCTTACTTTTTTCTTTTATGATTACGAAAGTTTCGGTGTGAGTCCGGCGTTAGATCGTCCGGCACAGTT
TGCCGGTATTCGTACCGATAGTGATTTTAATATCATCGGTGAGCCGGTGATGTTTTATTGTAAGCAAACACCGGATTATT
TACCTTCGCCTGAAGCGGTGATGGTGACGGGTATTACTCCGCAACAGTGTAACGCTGAAGGCGTGCCGGAACCGGAATTT
GCTGCACGAATCCACGCTGAATTCAGCCAGCCGAACACTTGCATTTTAGGCTATAACAATATTCGTTATGACGATGAAAT
GACCCGTTATACCTTTTTCCGCAATTTCTTTGACCCGTATGAATATAGCTGGAAAAATGGTAATTCTCGTTGGGATCTGT
TAGATCTTGTTCGAGCTTGTTATGCACTGCGTCCGGACGGCATTGAATGGGTAATAGATGAAAACGGTGTGCCGAATTTC
AAATTAGAGAATCTCACTAAAGCGAACGGCATTGCTCATGAAAATGCGCACGATGCAATGGCGGACGTTTACGCCACGAT
TGCGATGGCGAAATTGATTAAGCAAAAACAGCCGAAACTTTTCCAATTTTTCTTTGAGAATCGTGGTAAGAAGGAAATTG
AGAAAATGATTGATACCGGTGAAATGACCCCGTTGGTACACGTTTCCGGTATGTTCGGTAATGCGCGTGCTAATACCGCT
TGGATTGCACCGATTGCGTGGCACCCAACTAATCAAAATCAAGTGTTATGTTGCGATCTATCCGGCGATGTTAGTGCCTT
ATTAACGGATTCAGCGGAAGAATTACGTACTCGTCTATACACTAAAAAAGAAGAGCTGGCTGAAGGTGTTGCACCCGTTC
CATTAAAAGGGGTACATATTAATCGTTGTCCGATTATTGCCCCGGCAAAAGTGTTGTTGCCTGAAAATGCGGCTCGCTTA
GGCATTGATCGTGAGCGTTGTTTGGAAAATCTCAAATTACTGAAGGCGAATAAAAGTTTAGTGCGTGAGAAAGTGACCGA
AATTTTTATGGAAGAACGGAGCTTTGAGCCTTCTGCGAATGTGGAAACCACGCTGTATGACGGCTTTTTCTCACCGGCAG
ATAAAAATAATATGGCGATTTTGCGTACGTTACCGCCGCAAGAATTGGCGCATCACGGCTTACAGTTTGCCGATGAACGA
GTAGAAGCGTTGTTATTTCATTATCGAGCCAGACATTATCCCGAAACATTGAGCCGAGCGGAACAGATTAAATGGCAGAA
ATATTGTCATCAGCAGATAGATGCCAAATCGGCACAATTTGCCGAAGCGATTGATAGCTTATTCCAAATTCATCACGATA
ATCCGGAAAAGGTAAAATTATTGGAAAATTTGACCGCTTACGCTGCACAAATTGCGGAATTTCAGGTAGTTAAACACACC
GCTAATGCGCAAAGCGAGCAGCTAGTTTCAGCCTTAAACCAAGTGGCGGAACAGGGTATGGATAAAGCGGCGAAGTTGGA
AATGCTAAAGGCATTAATTAAATAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(9-188)

Exonuclease C-terminal (ExoI_SH3)

(208-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

54.176

90.856

0.492

Multiple sequence alignment