Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   D1107_RS05425 Genome accession   NZ_CP031860
Coordinates   1224558..1226366 (-) Length   602 a.a.
NCBI ID   WP_237592545.1    Uniprot ID   -
Organism   Actinobacillus pleuropneumoniae strain 3906     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1219558..1231366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1107_RS05400 (D1107_05450) nagZ 1219560..1220597 (+) 1038 WP_011848533.1 beta-N-acetylhexosaminidase -
  D1107_RS05405 (D1107_05455) rlmC 1220678..1221853 (+) 1176 WP_005601582.1 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC -
  D1107_RS05410 (D1107_05460) eno 1222060..1223370 (+) 1311 WP_005597992.1 phosphopyruvate hydratase -
  D1107_RS05415 (D1107_05465) - 1223446..1224075 (+) 630 WP_005597993.1 NUDIX hydrolase N-terminal domain-containing protein -
  D1107_RS05420 (D1107_05470) - 1224089..1224499 (+) 411 WP_005597994.1 DUF2251 domain-containing protein -
  D1107_RS05425 (D1107_05475) recQ 1224558..1226366 (-) 1809 WP_237592545.1 ATP-dependent DNA helicase RecQ Machinery gene
  D1107_RS05430 (D1107_05480) cyaY 1226451..1226756 (-) 306 WP_005601586.1 iron donor protein CyaY -
  D1107_RS05435 (D1107_05485) - 1226765..1227541 (-) 777 WP_237592546.1 glycosyltransferase family 25 protein -
  D1107_RS05440 (D1107_05490) tsaD 1227582..1228625 (-) 1044 WP_237592547.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  D1107_RS05445 (D1107_05495) - 1228717..1229493 (-) 777 WP_237592548.1 outer membrane protein assembly factor BamD -
  D1107_RS05450 (D1107_05500) rluD 1229646..1230623 (+) 978 WP_005598003.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 68487.48 Da        Isoelectric Point: 7.8241

>NTDB_id=271966 D1107_RS05425 WP_237592545.1 1224558..1226366(-) (recQ) [Actinobacillus pleuropneumoniae strain 3906]
MQLSQTAAKDVLNNVFGYQSFRHGQQEVIDSVLAGRDCLVIMTTGGGKSLCYQVPALCLDGITLVISPLISLMKDQVDQL
LTNGIEAGFLNSTQTFEEQRLVEQKALSGQLKLLYLSPEKVMTQGFFHFISLCKISLIAVDEAHCVSQWGHDFRPEYTLL
GNLRDTFPNVPLMALTATADPTTRHDILQHLRLTDPHTYLGSFDRPNIRYTVQEKFKPVEQLAKFISKQQGKSGIVYCNS
RKKVEEITEKLASRKISVMGYHAGMSVQQRETVQNAFQRDNIQVVVATIAFGMGINKSNVRFVVHFDLPRSIESYYQETG
RAGRDDLPSEAVLFYDPADYAWLQKVLLEEPESEQRDIKQHKLQAIGAFAESQTCRRLVLLNYFGESRQEPCKNCDICLD
PPRKYDGTLDAQKVMSVIYRTGQTFGAHHVIGVLRGLNNQKIRQFNHDQLSVYGIGKEQSQDYWLSIIRQLIHLGLIRQN
IVNHSALQLTEEARPVLRSEKKLELAMPRLTFSATAYVQKQSSVRYDKDLFARLRFLRKQIADKENIPPYVVFNDATLQE
MAEFLPLSEVEMLDINGVGERKLERFGGAFLSLIREHCNNRQ

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=271966 D1107_RS05425 WP_237592545.1 1224558..1226366(-) (recQ) [Actinobacillus pleuropneumoniae strain 3906]
ATGCAATTATCTCAAACCGCCGCCAAAGACGTATTGAATAATGTCTTCGGTTATCAATCTTTTCGTCACGGGCAACAAGA
AGTGATCGATTCGGTTTTGGCGGGAAGAGATTGCCTTGTGATTATGACTACAGGCGGCGGTAAGTCGCTTTGTTATCAAG
TACCGGCGCTTTGCTTAGACGGCATTACGCTAGTGATTTCTCCGCTGATTTCTTTGATGAAAGATCAGGTTGATCAGTTG
CTTACCAACGGTATCGAAGCCGGCTTTTTAAATTCCACGCAAACTTTTGAAGAACAACGGCTAGTCGAACAGAAAGCACT
TTCCGGTCAGTTGAAATTACTTTATCTCTCGCCGGAAAAAGTAATGACTCAAGGCTTTTTCCATTTTATTTCGTTATGCA
AAATTAGCCTGATTGCAGTCGATGAAGCGCATTGCGTTTCGCAATGGGGGCATGATTTCCGTCCGGAATACACTTTATTA
GGCAATTTGCGTGATACCTTTCCGAATGTGCCGCTGATGGCATTAACGGCAACGGCAGATCCTACGACTCGCCACGATAT
TCTGCAGCACCTGCGCTTAACCGATCCGCATACCTATTTAGGCAGTTTTGATCGCCCGAATATTCGCTATACGGTACAAG
AAAAATTTAAGCCGGTGGAACAGTTGGCAAAATTCATCAGTAAACAGCAGGGCAAGAGCGGTATCGTTTATTGCAATAGC
CGTAAAAAAGTGGAAGAAATTACCGAAAAATTGGCGTCACGTAAAATTTCAGTAATGGGTTACCACGCCGGTATGTCGGT
TCAGCAACGTGAAACGGTTCAAAATGCGTTTCAGCGAGATAATATTCAAGTTGTGGTGGCTACTATTGCTTTCGGGATGG
GGATTAATAAATCAAACGTGCGTTTTGTGGTGCATTTCGATTTGCCACGCAGTATCGAATCCTACTATCAAGAAACCGGG
CGTGCCGGACGTGATGATTTACCATCTGAAGCGGTGTTATTTTATGATCCCGCCGATTATGCGTGGTTACAGAAAGTATT
ATTGGAAGAGCCGGAAAGCGAACAGCGCGATATAAAGCAACATAAATTACAAGCCATCGGTGCTTTTGCCGAATCGCAAA
CCTGCCGCCGTTTAGTGCTATTGAATTATTTCGGCGAATCACGCCAAGAACCCTGTAAAAACTGTGATATTTGCTTAGAT
CCGCCTCGTAAATATGACGGTACGTTAGATGCGCAAAAAGTGATGTCGGTTATTTACCGTACCGGTCAAACTTTTGGCGC
ACACCATGTGATTGGCGTATTACGAGGGTTAAATAACCAAAAAATTCGCCAGTTTAATCATGATCAGCTTTCGGTGTACG
GTATCGGTAAAGAGCAGAGCCAAGATTATTGGTTAAGTATTATTCGTCAATTAATTCATTTGGGTTTAATTCGTCAAAAT
ATCGTGAACCATTCGGCATTACAGCTGACGGAAGAAGCTCGTCCGGTGCTGCGTTCGGAGAAAAAACTTGAATTGGCAAT
GCCTCGCTTAACCTTCTCGGCAACGGCTTATGTACAGAAACAGAGTTCGGTTCGTTACGATAAAGACTTATTTGCTCGCC
TGCGTTTTCTACGTAAACAAATTGCCGATAAAGAAAATATCCCGCCTTATGTGGTATTCAACGATGCGACTTTGCAGGAA
ATGGCGGAATTTTTACCGCTTAGCGAAGTGGAAATGTTGGATATTAATGGGGTCGGAGAACGTAAACTGGAACGTTTCGG
CGGTGCGTTTTTAAGCCTGATTCGAGAGCATTGTAATAATCGCCAATAA

Domains

Predicted by InterProScan.

HRDC domain (HRDC)

(528-594)

DEAD/DEAH box helicase (DEAD)

(24-180)

RQC domain (RQC)

(401-509)

RecQ zinc-binding (RecQ_Zn_bind)

(339-399)

Helicase conserved C-terminal domain (Helicase_C)

(220-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

39.799

99.336

0.395