Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   D1107_RS03215 Genome accession   NZ_CP031860
Coordinates   714286..715830 (-) Length   514 a.a.
NCBI ID   WP_237593027.1    Uniprot ID   -
Organism   Actinobacillus pleuropneumoniae strain 3906     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 709286..720830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1107_RS03190 (D1107_03230) efeO 710173..710981 (+) 809 Protein_621 iron uptake system protein EfeO -
  D1107_RS03195 (D1107_03235) efeB 710993..712186 (+) 1194 WP_237593025.1 iron uptake transporter deferrochelatase/peroxidase subunit -
  D1107_RS03200 (D1107_03240) - 712197..712817 (+) 621 WP_005607537.1 hypothetical protein -
  D1107_RS03205 (D1107_03245) - 712857..713675 (-) 819 WP_005604126.1 PHP domain-containing protein -
  D1107_RS03210 (D1107_03250) - 713679..714269 (-) 591 WP_237593026.1 DNA glycosylase -
  D1107_RS03215 (D1107_03255) sbcB 714286..715830 (-) 1545 WP_237593027.1 exodeoxyribonuclease I Machinery gene
  D1107_RS03220 (D1107_03260) - 716072..717478 (-) 1407 WP_005614935.1 chloride channel protein -
  D1107_RS03225 (D1107_03265) asnS 717686..719089 (+) 1404 WP_237593028.1 asparagine--tRNA ligase -
  D1107_RS03230 (D1107_03270) epmB 719191..720192 (-) 1002 WP_237593029.1 EF-P beta-lysylation protein EpmB -

Sequence

Protein


Download         Length: 514 a.a.        Molecular weight: 58592.70 Da        Isoelectric Point: 5.5052

>NTDB_id=271950 D1107_RS03215 WP_237593027.1 714286..715830(-) (sbcB) [Actinobacillus pleuropneumoniae strain 3906]
MNKNLTFFFYDYESFGVSPALDRPAQFAGIRTDSDFNIIGEPVMFYCKQTPDYLPSPEAVMVTDITPQQCNAEGVPEPEF
AARIHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFFDPYEYSWKNGNSRWDLLDLVRACYALRPDGIEWVTDENGVPNF
KLENLTKANGIAHENAHDAMADVYATIAMAKLIKQKQPKLFQFFFENRGKKEIEKMIDTGEMTPLVHVSGMFGNARANTA
WIAPIAWHPTNQNQVLCCDLSGDVSALLTDSAEELRTRLYTKKEELAEGVAPVPLKGVHINRCPIIAPAKVLLPENAARL
GIDRERCLENLKLLKANKSLVREKVTEIFMEERSFEPSANVETTLYDGFFSPADKNNMAILRTLPPQELAHHGLQFADER
VEALLFHYRARHYPETLSRAEQIKWQKYCHQQIDAKSVQFAEAIDILFQIHHNNPEKVKLLENLTAYAAQIAEFQVVKHT
ANEQNEQLVSALNQVAEQGMDKAAKLEMLKALIK

Nucleotide


Download         Length: 1545 bp        

>NTDB_id=271950 D1107_RS03215 WP_237593027.1 714286..715830(-) (sbcB) [Actinobacillus pleuropneumoniae strain 3906]
ATGAATAAAAATCTTACTTTTTTCTTTTATGATTACGAAAGTTTCGGCGTGAGTCCGGCATTAGATCGTCCGGCACAGTT
TGCCGGTATTCGTACCGATAGTGATTTTAATATCATCGGTGAGCCGGTGATGTTTTATTGTAAGCAAACACCGGATTATT
TACCTTCGCCAGAAGCAGTGATGGTAACCGATATTACTCCGCAACAGTGTAACGCTGAAGGTGTGCCGGAACCGGAATTT
GCCGCACGAATCCACGCTGAATTCAGCCAACCGAATACCTGTATTTTAGGCTATAACAATATTCGTTATGATGACGAAAT
GACCCGTTATACCTTTTTCCGCAATTTCTTTGATCCGTATGAATATAGCTGGAAAAACGGCAATTCTCGCTGGGATCTGT
TAGATCTAGTGCGAGCTTGTTATGCACTGCGTCCGGACGGAATCGAATGGGTAACGGACGAAAACGGTGTGCCGAATTTC
AAATTAGAGAATCTCACCAAAGCGAACGGCATTGCTCATGAAAATGCGCACGATGCAATGGCGGACGTTTACGCCACGAT
TGCGATGGCGAAATTGATTAAGCAAAAACAGCCGAAACTTTTCCAATTTTTCTTTGAAAATCGTGGTAAGAAAGAAATTG
AGAAAATGATTGATACCGGTGAAATGACCCCGTTGGTACACGTTTCCGGTATGTTCGGTAATGCGCGTGCTAATACCGCT
TGGATTGCACCGATTGCGTGGCACCCAACTAATCAAAATCAAGTGTTATGTTGCGATCTATCCGGCGATGTTAGTGCCTT
ATTAACGGATTCAGCGGAAGAATTACGTACTCGTCTATACACTAAAAAAGAAGAGCTGGCTGAAGGTGTTGCACCCGTTC
CATTAAAAGGGGTGCATATTAATCGTTGTCCGATTATTGCCCCGGCAAAAGTGTTGTTGCCTGAAAATGCGGCTCGCTTA
GGCATTGATCGTGAGCGTTGTTTGGAAAATCTCAAATTACTGAAAGCGAATAAAAGTTTAGTGCGCGAGAAAGTGACCGA
AATTTTTATGGAAGAACGGAGCTTTGAGCCTTCTGCGAATGTGGAAACCACGCTGTATGACGGCTTTTTCTCACCGGCAG
ATAAAAATAATATGGCGATTTTGCGTACGTTACCGCCGCAAGAATTGGCGCATCACGGCTTACAGTTTGCCGATGAACGA
GTAGAAGCGTTGTTATTTCATTATCGAGCCAGACATTATCCCGAAACATTGAGCCGAGCGGAACAGATTAAATGGCAGAA
ATATTGTCATCAGCAGATAGATGCCAAATCGGTACAATTTGCCGAAGCGATTGATATCTTATTCCAAATTCATCACAATA
ATCCGGAAAAGGTAAAATTATTGGAAAATTTGACCGCTTACGCTGCACAAATTGCGGAATTTCAGGTAGTTAAACACACC
GCTAATGAACAAAATGAACAGTTGGTTTCAGCCTTAAACCAAGTGGCGGAACAGGGTATGGATAAAGCGGCGAAGTTGGA
AATGCTAAAGGCATTAATTAAATAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(9-188)

Exonuclease C-terminal (ExoI_SH3)

(208-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

53.961

90.856

0.49