Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   D1108_RS00390 Genome accession   NZ_CP031859
Coordinates   84061..84666 (-) Length   201 a.a.
NCBI ID   WP_005618700.1    Uniprot ID   A0ABM6X5M1
Organism   Actinobacillus pleuropneumoniae strain HS143     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 79061..89666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1108_RS00360 (D1108_00360) - 79809..80798 (+) 990 WP_012262684.1 peptide ABC transporter ATP-binding protein -
  D1108_RS00365 (D1108_00365) psiE 80871..81281 (-) 411 WP_005595704.1 phosphate-starvation-inducible protein PsiE -
  D1108_RS00370 (D1108_00370) - 81359..81991 (-) 633 WP_012262685.1 hydrolase -
  D1108_RS00375 (D1108_00375) - 82046..82390 (-) 345 WP_005595710.1 RidA family protein -
  D1108_RS00380 (D1108_00380) - 82477..83514 (-) 1038 WP_012262686.1 branched-chain amino acid aminotransferase -
  D1108_RS00385 (D1108_00385) grxD 83657..83989 (-) 333 WP_005600046.1 Grx4 family monothiol glutaredoxin -
  D1108_RS00390 (D1108_00390) recR 84061..84666 (-) 606 WP_005618700.1 recombination mediator RecR Machinery gene
  D1108_RS00395 (D1108_00395) - 84737..85066 (-) 330 WP_005600053.1 YbaB/EbfC family nucleoid-associated protein -
  D1108_RS00400 (D1108_00400) - 85235..86092 (-) 858 WP_005595716.1 energy transducer TonB family protein -
  D1108_RS00405 (D1108_00405) exbD 86102..86491 (-) 390 WP_005595717.1 TonB system transport protein ExbD -
  D1108_RS00410 (D1108_00410) exbB 86536..86988 (-) 453 WP_005595719.1 TonB-system energizer ExbB -
  D1108_RS00415 (D1108_00415) glpE 87176..87502 (+) 327 WP_005595720.1 thiosulfate sulfurtransferase GlpE -
  D1108_RS00420 (D1108_00420) - 87546..88391 (+) 846 WP_005603255.1 co-chaperone YbbN -
  D1108_RS00425 (D1108_00425) dhaM 88465..88872 (-) 408 WP_005600064.1 dihydroxyacetone kinase phosphoryl donor subunit DhaM -
  D1108_RS00430 (D1108_00430) dhaL 88881..89507 (-) 627 WP_005600065.1 dihydroxyacetone kinase subunit DhaL -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 22182.40 Da        Isoelectric Point: 6.4865

>NTDB_id=271882 D1108_RS00390 WP_005618700.1 84061..84666(-) (recR) [Actinobacillus pleuropneumoniae strain HS143]
MQISPLLENLMEALRALPGVGPKSAQRMAYHLLQRNRSGGINLSKALNEAMTHIGHCRSCRTFTEEDECNICKNPRRQMS
GQLCVVEMPEDIQAIEQTGQFSGRYFVLMGHLSPLDGIGPREIGLDLLQSRLENESFHEVILATNPTIEGDATANYIAEM
CRIHNVKVTRIAHGIPVGGSLEMVDGTTLSHSFAGRRDISL

Nucleotide


Download         Length: 606 bp        

>NTDB_id=271882 D1108_RS00390 WP_005618700.1 84061..84666(-) (recR) [Actinobacillus pleuropneumoniae strain HS143]
ATGCAAATTAGCCCTTTACTCGAAAATCTGATGGAAGCCCTACGTGCATTACCCGGCGTCGGTCCGAAATCCGCACAACG
TATGGCGTATCATTTATTGCAACGCAATCGTTCCGGCGGTATCAATTTATCCAAAGCCTTAAATGAAGCGATGACGCATA
TCGGTCATTGCCGTTCTTGCCGTACTTTTACCGAAGAAGACGAATGCAATATTTGTAAAAATCCTCGTCGCCAAATGAGC
GGTCAGCTTTGCGTAGTAGAAATGCCGGAAGATATTCAAGCGATTGAACAAACCGGACAGTTTTCGGGACGTTATTTCGT
ATTAATGGGACATCTTTCACCGCTAGACGGTATCGGACCGAGAGAAATCGGCTTGGATTTGTTACAAAGCCGTTTAGAAA
ACGAATCTTTTCACGAAGTTATTCTAGCTACCAATCCGACCATTGAAGGTGATGCCACCGCCAACTATATTGCGGAAATG
TGCCGCATTCACAACGTGAAAGTAACTCGAATTGCGCATGGGATTCCGGTCGGCGGTTCATTAGAAATGGTGGACGGTAC
GACCCTTTCCCACTCTTTTGCCGGCAGACGAGATATTTCGTTATAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(82-172)

RecR protein (RecR_ZnF)

(42-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

42.714

99.005

0.423
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42

99.502

0.418