Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   D1109_RS08040 Genome accession   NZ_CP031858
Coordinates   1649734..1650396 (+) Length   220 a.a.
NCBI ID   WP_005599756.1    Uniprot ID   A3N3Q8
Organism   Actinobacillus pleuropneumoniae strain A-85/14     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1644734..1655396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1109_RS08005 (D1109_08015) - 1645173..1645733 (-) 561 WP_237610979.1 TIGR00730 family Rossman fold protein -
  D1109_RS08010 (D1109_08020) - 1645796..1646119 (+) 324 WP_012263466.1 MazG nucleotide pyrophosphohydrolase domain-containing protein -
  D1109_RS08015 (D1109_08025) crp 1646168..1646842 (-) 675 WP_005599747.1 cAMP-activated global transcriptional regulator CRP Regulator
  D1109_RS08020 (D1109_08030) - 1646920..1647138 (-) 219 WP_005599748.1 YheU family protein -
  D1109_RS08025 (D1109_08035) slmA 1647144..1647752 (-) 609 WP_005620316.1 nucleoid occlusion factor SlmA -
  D1109_RS08030 (D1109_08040) dut 1647858..1648313 (-) 456 WP_005599752.1 dUTP diphosphatase -
  D1109_RS08035 (D1109_08045) coaBC 1648322..1649527 (-) 1206 WP_237610980.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  D1109_RS08040 (D1109_08050) radC 1649734..1650396 (+) 663 WP_005599756.1 RadC family protein Machinery gene
  D1109_RS08045 (D1109_08055) rpmB 1650565..1650801 (+) 237 WP_005599762.1 50S ribosomal protein L28 -
  D1109_RS08050 (D1109_08060) rpmG 1650813..1650983 (+) 171 WP_005599764.1 50S ribosomal protein L33 -
  D1109_RS08055 (D1109_08070) - 1651348..1651908 (+) 561 WP_005599767.1 hypothetical protein -
  D1109_RS08060 (D1109_08075) - 1652189..1653553 (+) 1365 WP_005599768.1 diaminobutyrate--2-oxoglutarate transaminase -
  D1109_RS08065 (D1109_08080) ddc 1653682..1655217 (+) 1536 WP_009874861.1 L-2,4-diaminobutyrate decarboxylase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25014.07 Da        Isoelectric Point: 5.7943

>NTDB_id=271855 D1109_RS08040 WP_005599756.1 1649734..1650396(+) (radC) [Actinobacillus pleuropneumoniae strain A-85/14]
MDNVVLMPREKLLASGAESLTDQELLAIFLRTGIKGMPVMQLSQEVLNGFGSLRELLSADLATFCRMKGLGQTQFIQLQA
SKEMTKRYLAQQMQVRENINEPYLAVMCFQAELESEEREVFMVMFLDNQNRLIKKEKMFYGTINQATVYPREIIKEALKC
NAAAIIVAHNHPSGNCTPSESDRALTKKLEMACDLVGIRFVDHIVVGKGDYFSFEEEKFR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=271855 D1109_RS08040 WP_005599756.1 1649734..1650396(+) (radC) [Actinobacillus pleuropneumoniae strain A-85/14]
ATGGATAACGTTGTATTAATGCCAAGAGAAAAATTATTGGCCTCCGGAGCGGAATCACTCACCGATCAAGAATTGTTGGC
GATTTTTCTACGTACGGGTATCAAGGGCATGCCTGTTATGCAATTATCGCAAGAAGTATTGAACGGTTTCGGTTCGTTAC
GAGAATTGTTAAGTGCTGATTTAGCGACTTTCTGCCGTATGAAAGGCTTAGGACAAACGCAATTTATTCAGTTGCAAGCC
TCAAAGGAAATGACTAAGCGTTATTTAGCACAACAAATGCAAGTGAGAGAAAATATTAATGAACCTTATTTAGCCGTAAT
GTGCTTTCAAGCCGAATTGGAATCGGAAGAACGAGAGGTATTTATGGTGATGTTTCTTGATAATCAGAATCGGCTGATTA
AAAAAGAAAAAATGTTTTACGGCACCATTAATCAAGCAACGGTTTACCCTAGAGAAATCATTAAAGAAGCATTAAAATGT
AATGCGGCGGCAATTATTGTTGCACACAATCATCCGTCGGGAAATTGTACTCCTTCCGAATCGGATAGAGCATTGACGAA
AAAATTGGAAATGGCGTGCGATTTGGTCGGTATTCGCTTTGTCGATCATATCGTTGTCGGCAAAGGCGATTATTTTTCCT
TCGAAGAAGAGAAGTTTCGCTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(8-74)

RadC-like JAB domain (RadC)

(102-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3N3Q8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

63.721

97.727

0.623