Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   D1109_RS00680 Genome accession   NZ_CP031858
Coordinates   151203..152747 (-) Length   514 a.a.
NCBI ID   WP_237611194.1    Uniprot ID   -
Organism   Actinobacillus pleuropneumoniae strain A-85/14     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 146203..157747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1109_RS00655 (D1109_00640) efeO 147087..147899 (+) 813 WP_005604121.1 iron uptake system protein EfeO -
  D1109_RS00660 (D1109_00645) efeB 147911..149104 (+) 1194 WP_237611193.1 iron uptake transporter deferrochelatase/peroxidase subunit -
  D1109_RS00665 (D1109_00650) - 149115..149735 (+) 621 WP_005596976.1 hypothetical protein -
  D1109_RS00670 (D1109_00655) - 149774..150592 (-) 819 WP_237594208.1 PHP domain-containing protein -
  D1109_RS00675 (D1109_00660) - 150596..151186 (-) 591 WP_005611913.1 hypothetical protein -
  D1109_RS00680 (D1109_00665) sbcB 151203..152747 (-) 1545 WP_237611194.1 exodeoxyribonuclease I Machinery gene
  D1109_RS00685 (D1109_00670) - 152989..154383 (-) 1395 WP_237611195.1 chloride channel protein -
  D1109_RS00690 (D1109_00675) asnS 154591..155994 (+) 1404 WP_005617159.1 asparagine--tRNA ligase -
  D1109_RS00695 (D1109_00680) epmB 156098..157099 (-) 1002 WP_005600857.1 EF-P beta-lysylation protein EpmB -

Sequence

Protein


Download         Length: 514 a.a.        Molecular weight: 58675.88 Da        Isoelectric Point: 5.7736

>NTDB_id=271827 D1109_RS00680 WP_237611194.1 151203..152747(-) (sbcB) [Actinobacillus pleuropneumoniae strain A-85/14]
MNKNLTFFFYDYESFGVSPALDRPAQFAGIRTDSDFNIIGEPVMFYCKQTPDYLPSPEAVMVTGITPQQCNAEGVPEPEF
AARIHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFFDPYEYSWKNSNSRWDLLDLVRACYALRPDGIEWVIDENGVPNF
KLENLTKANGIAHENAHDAMADVYATIAMAKLIKQKQPKLFQFFFENRGKKEIEKMIDTGEMTPLVHVSGMFGNARANTA
WIAPIAWHPTNQNQVLCCDLSGDVSALLTDSAEELRTRLYTKKEELAEGVAPVPLKGVHINRCPIIAPAKVLLPENAARL
GIDRERCLENLKLLKANKSLVREKVTEIFMEERSFEPSANVETTLYDGFFSPADKNNMAILRTLPPQELAHHGLQFADER
VEALLFHYRARHYPETLSRAEQIKWQKYCHQQIDAKSVQFAEAIDILFQIHHDNPEKVKLLENLTAYAAQIAEFQVVKHT
ANEQNEQLVSALNQVAEQRMNKAAKLEMLKALIK

Nucleotide


Download         Length: 1545 bp        

>NTDB_id=271827 D1109_RS00680 WP_237611194.1 151203..152747(-) (sbcB) [Actinobacillus pleuropneumoniae strain A-85/14]
ATGAATAAAAATCTTACTTTTTTCTTTTATGATTACGAAAGTTTCGGTGTGAGTCCGGCGTTAGATCGTCCGGCACAGTT
TGCCGGTATTCGTACCGATAGTGATTTTAATATCATCGGTGAGCCGGTGATGTTTTATTGTAAGCAAACACCGGATTATT
TACCTTCGCCTGAAGCGGTGATGGTGACGGGTATTACTCCGCAACAGTGTAACGCTGAAGGCGTGCCGGAACCGGAATTT
GCCGCACGAATCCACGCTGAATTCAGCCAGCCGAACACTTGCATTTTAGGCTATAACAATATTCGTTATGACGATGAAAT
GACCCGTTATACCTTTTTCCGCAATTTCTTTGACCCGTATGAATATAGCTGGAAAAATAGTAATTCTCGTTGGGATCTGT
TAGATCTTGTTCGAGCTTGTTATGCACTGCGTCCGGACGGCATTGAATGGGTAATAGATGAAAACGGTGTGCCGAATTTC
AAATTAGAGAATCTCACTAAAGCGAACGGCATTGCTCATGAAAATGCGCACGATGCAATGGCGGACGTTTACGCCACGAT
TGCGATGGCGAAATTGATTAAGCAAAAACAGCCGAAACTTTTCCAATTTTTCTTTGAGAATCGTGGTAAGAAGGAAATTG
AGAAAATGATTGATACCGGTGAAATGACCCCGTTGGTACACGTTTCCGGTATGTTCGGTAATGCGCGTGCTAATACCGCT
TGGATTGCACCGATTGCGTGGCACCCAACTAATCAAAATCAAGTGTTATGTTGCGATCTATCCGGCGATGTTAGTGCCTT
ATTAACGGATTCAGCGGAAGAATTACGTACTCGTCTATACACTAAAAAAGAAGAGCTGGCTGAAGGTGTTGCACCCGTTC
CATTAAAAGGGGTGCATATTAATCGTTGTCCGATTATTGCCCCGGCAAAAGTGTTGTTGCCTGAAAATGCGGCTCGCTTA
GGCATTGATCGTGAGCGTTGTTTGGAAAATCTCAAATTACTGAAAGCGAATAAAAGTTTAGTGCGCGAGAAAGTGACCGA
AATTTTTATGGAAGAACGGAGCTTTGAGCCTTCTGCGAATGTGGAAACCACGCTGTATGACGGCTTTTTCTCACCGGCAG
ATAAAAATAATATGGCGATTTTGCGTACGTTACCGCCGCAAGAATTGGCGCATCACGGCTTACAGTTTGCCGATGAACGA
GTAGAAGCGTTGTTATTTCATTATCGAGCCAGACATTATCCCGAAACATTGAGCCGAGCGGAACAGATTAAATGGCAGAA
ATATTGTCATCAGCAGATAGATGCCAAATCGGTACAATTTGCCGAAGCGATTGATATCTTATTCCAAATTCATCACGATA
ATCCGGAAAAGGTAAAATTATTGGAAAATTTGACCGCTTACGCTGCACAAATTGCGGAATTTCAGGTAGTTAAACACACC
GCTAATGAACAAAATGAACAGTTGGTTTCAGCCTTAAACCAAGTGGCGGAACAGAGGATGAATAAAGCTGCGAAGTTGGA
AATGCTAAAGGCATTAATTAAATAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(208-469)

Exonuclease (RNase_T)

(9-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

53.961

90.856

0.49