Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   D1110_RS05825 Genome accession   NZ_CP031856
Coordinates   1291997..1293805 (-) Length   602 a.a.
NCBI ID   WP_237585769.1    Uniprot ID   -
Organism   Actinobacillus pleuropneumoniae strain 16287-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1286997..1298805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1110_RS05800 (D1110_05835) nagZ 1286999..1288036 (+) 1038 WP_011848533.1 beta-N-acetylhexosaminidase -
  D1110_RS05805 (D1110_05840) rlmC 1288117..1289292 (+) 1176 WP_237585768.1 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC -
  D1110_RS05810 (D1110_05845) eno 1289499..1290809 (+) 1311 WP_005597992.1 phosphopyruvate hydratase -
  D1110_RS05815 (D1110_05850) - 1290885..1291514 (+) 630 WP_005597993.1 NUDIX hydrolase N-terminal domain-containing protein -
  D1110_RS05820 (D1110_05855) - 1291528..1291938 (+) 411 WP_005597994.1 DUF2251 domain-containing protein -
  D1110_RS05825 (D1110_05860) recQ 1291997..1293805 (-) 1809 WP_237585769.1 ATP-dependent DNA helicase RecQ Machinery gene
  D1110_RS05830 (D1110_05865) cyaY 1293890..1294195 (-) 306 WP_005608334.1 iron donor protein CyaY -
  D1110_RS05835 (D1110_05870) - 1294204..1294980 (-) 777 Protein_1143 glycosyltransferase family 25 protein -
  D1110_RS05840 (D1110_05880) tsaD 1295021..1296064 (-) 1044 WP_005598001.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  D1110_RS05845 (D1110_05885) - 1296156..1296932 (-) 777 WP_005598002.1 outer membrane protein assembly factor BamD -
  D1110_RS05850 (D1110_05890) rluD 1297085..1298062 (+) 978 WP_005598003.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 68406.37 Da        Isoelectric Point: 7.4705

>NTDB_id=271803 D1110_RS05825 WP_237585769.1 1291997..1293805(-) (recQ) [Actinobacillus pleuropneumoniae strain 16287-1]
MQLSQTAAKDVLNNVFGYQSFRHGQQEVIDSVLAGRDCLVIMTTGGGKSLCYQVPALCLDGITLVISPLISLMKDQVDQL
LTNGIEAGFLNSTQTFEEQQLVEQKALSGQLKLLYLSPEKVMTQGFFHFISLCKISLIAVDEAHCVSQWGHDFRPEYTLL
GNLRDTFPNVPLMALTATADPTTRHDILQHLRLTDPHTYLGSFDRPNIRYTVQEKFKPVEQLAKFISKQQGKSGIVYCNS
RKKVEEITEKLASRKISVMGYHAGMSVQQRETVQNAFQRDNIQVVVATIAFGMGINKSNVRFVVHFDLPRSIESYYQETG
RAGRDDLPSEAVLFYDPADYAWLQKVLLEEPESEQRDIKQHKLQAIGAFAESQTCRRLVLLNYFGESRQEPCKNCDICLD
PPRKYDGTLDAQKVMSVIYRTGQTFGAHHVIGVLRGLNNQKIRQFNHDQLSVYGIGKEQSQDYWLSIIRQLIHLGLIRQN
IVNHSALQLTEEARPVLRSEKKLELAMPRLTFSATAYVQKQSSVCYDKDLFARLRFLRKQIADKENIPPYVVFNDATLQE
MAEFLPLSEVEMLDINGVGERKLERFGGAFLSLIREHCNNRQ

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=271803 D1110_RS05825 WP_237585769.1 1291997..1293805(-) (recQ) [Actinobacillus pleuropneumoniae strain 16287-1]
ATGCAATTATCTCAAACCGCCGCCAAAGACGTATTGAATAATGTCTTCGGTTATCAATCTTTTCGTCACGGACAACAAGA
AGTGATCGATTCGGTTCTGGCGGGTAGAGATTGTTTAGTCATTATGACCACCGGCGGCGGTAAGTCGCTTTGTTACCAAG
TACCGGCGCTTTGCTTAGACGGCATTACGCTAGTGATTTCTCCGCTGATTTCTTTGATGAAAGATCAGGTTGATCAGTTG
CTTACCAATGGTATCGAAGCCGGCTTTTTAAATTCCACGCAAACTTTTGAAGAACAACAGCTTGTCGAACAGAAAGCACT
TTCCGGTCAGTTGAAATTACTTTATCTCTCGCCGGAAAAAGTAATGACTCAAGGCTTTTTCCATTTTATTTCGTTATGCA
AAATTAGCCTGATTGCAGTCGATGAAGCGCATTGCGTTTCGCAATGGGGGCATGATTTCCGTCCGGAATACACTTTATTA
GGCAATTTGCGTGATACCTTTCCGAATGTGCCGCTGATGGCATTAACGGCAACGGCAGATCCTACGACTCGCCACGATAT
TCTGCAGCACCTGCGCTTAACCGATCCGCATACCTATTTAGGCAGTTTTGATCGCCCGAATATTCGCTATACGGTACAAG
AAAAATTTAAGCCAGTGGAACAGTTGGCAAAATTCATCAGTAAACAGCAGGGCAAGAGCGGTATCGTTTATTGCAATAGC
CGTAAAAAAGTGGAAGAAATTACCGAAAAATTGGCGTCACGTAAAATTTCAGTAATGGGTTACCACGCCGGTATGTCGGT
TCAGCAACGTGAAACGGTTCAAAATGCGTTTCAGCGAGATAATATTCAAGTTGTGGTGGCTACTATTGCTTTCGGGATGG
GGATTAATAAATCAAACGTGCGTTTTGTGGTGCATTTCGATTTGCCACGCAGTATCGAATCCTACTATCAAGAAACCGGG
CGTGCCGGACGTGATGATTTACCATCTGAAGCGGTGTTATTTTATGATCCCGCCGATTATGCGTGGTTACAGAAAGTATT
ATTGGAAGAGCCGGAAAGCGAACAGCGCGATATAAAGCAACATAAATTACAAGCCATCGGTGCTTTTGCCGAATCGCAAA
CCTGCCGCCGTTTAGTGCTATTGAATTATTTCGGCGAATCACGCCAAGAACCCTGTAAAAACTGTGATATTTGCTTAGAT
CCGCCTCGTAAATATGACGGTACGTTAGATGCGCAAAAAGTGATGTCGGTTATTTACCGTACCGGTCAAACTTTTGGCGC
ACACCATGTGATTGGCGTATTACGAGGGTTAAATAACCAAAAAATTCGCCAGTTTAATCATGATCAGCTTTCGGTGTACG
GTATCGGTAAAGAGCAGAGCCAAGATTATTGGTTAAGTATTATTCGTCAATTAATTCATTTGGGTTTAATTCGTCAAAAT
ATCGTGAACCATTCGGCATTACAGCTGACGGAAGAAGCTCGTCCGGTGCTGCGTTCGGAGAAAAAACTTGAATTGGCAAT
GCCTCGCTTAACCTTCTCGGCAACGGCTTATGTACAGAAACAGAGTTCGGTTTGTTACGATAAAGACTTATTTGCTCGCC
TGCGTTTTCTACGTAAACAAATTGCCGATAAAGAAAATATCCCGCCTTATGTGGTATTCAACGATGCGACTTTGCAGGAA
ATGGCGGAATTTTTACCGCTTAGCGAAGTGGAAATGTTGGATATTAATGGGGTCGGAGAACGTAAACTGGAACGTTTCGG
CGGTGCGTTTTTAAGCCTGATTCGAGAGCATTGTAATAATCGCCAATAA

Domains

Predicted by InterProScan.

HRDC domain (HRDC)

(528-594)

Helicase conserved C-terminal domain (Helicase_C)

(220-324)

RecQ zinc-binding (RecQ_Zn_bind)

(339-399)

DEAD/DEAH box helicase (DEAD)

(24-180)

RQC domain (RQC)

(401-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

39.43

99.003

0.39