Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   D1110_RS05785 Genome accession   NZ_CP031856
Coordinates   1284695..1285327 (+) Length   210 a.a.
NCBI ID   WP_005608326.1    Uniprot ID   A3N1B4
Organism   Actinobacillus pleuropneumoniae strain 16287-1     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1279695..1290327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1110_RS05770 (D1110_05805) - 1279866..1280057 (-) 192 WP_012263101.1 hypothetical protein -
  D1110_RS10995 - 1280112..1280240 (-) 129 WP_005619459.1 hypothetical protein -
  D1110_RS05775 (D1110_05810) purT 1280760..1281941 (-) 1182 WP_237585766.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  D1110_RS05780 (D1110_05815) plsB 1282064..1284538 (-) 2475 WP_237585767.1 glycerol-3-phosphate 1-O-acyltransferase PlsB -
  D1110_RS05785 (D1110_05820) dinR/lexA 1284695..1285327 (+) 633 WP_005608326.1 transcriptional repressor LexA Regulator
  D1110_RS05790 (D1110_05825) mutH 1285387..1286067 (+) 681 WP_005604846.1 DNA mismatch repair endonuclease MutH -
  D1110_RS05795 (D1110_05830) - 1286153..1286884 (+) 732 WP_005597990.1 TerC family protein -
  D1110_RS05800 (D1110_05835) nagZ 1286999..1288036 (+) 1038 WP_011848533.1 beta-N-acetylhexosaminidase -
  D1110_RS05805 (D1110_05840) rlmC 1288117..1289292 (+) 1176 WP_237585768.1 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23368.76 Da        Isoelectric Point: 5.8460

>NTDB_id=271802 D1110_RS05785 WP_005608326.1 1284695..1285327(+) (dinR/lexA) [Actinobacillus pleuropneumoniae strain 16287-1]
MSRKHLTARQQEIFDFVKHHIETTGMPPTRVEIAREIGFKSPNAAEEHLKALARKGYIEMLSGTSRGIRILVDNEETAAN
DDGLPLIGKVAAGTPIMAIEHVESHYPVNGAMFNPNADYLLKVNGNSMEKIGILDGDLLAVHKTNFARNGQVVVARVDDE
VTVKRLEKKGDLIYLHPENDELQPIIVDPRIEYIEIEGIAVGVIRNNAWM

Nucleotide


Download         Length: 633 bp        

>NTDB_id=271802 D1110_RS05785 WP_005608326.1 1284695..1285327(+) (dinR/lexA) [Actinobacillus pleuropneumoniae strain 16287-1]
ATGTCACGTAAACACTTAACGGCTCGTCAGCAAGAAATTTTTGATTTTGTTAAACATCACATAGAAACCACCGGTATGCC
GCCGACTCGTGTTGAAATTGCAAGAGAAATCGGTTTTAAATCGCCGAATGCGGCAGAAGAACACTTAAAAGCATTGGCGC
GTAAAGGTTATATCGAAATGCTTTCCGGTACATCGCGCGGAATTCGTATTTTAGTCGATAACGAAGAAACTGCGGCAAAT
GACGACGGTTTACCGTTAATCGGCAAAGTGGCTGCCGGTACGCCGATTATGGCGATTGAACATGTGGAAAGTCATTATCC
GGTAAACGGCGCGATGTTTAATCCGAATGCCGACTATTTGCTCAAAGTAAACGGTAACTCCATGGAAAAAATCGGTATTT
TAGACGGTGACTTACTTGCGGTGCATAAAACCAATTTTGCCCGTAACGGCCAAGTCGTCGTCGCTCGCGTTGATGACGAA
GTGACCGTAAAACGCTTGGAGAAAAAAGGCGATCTTATTTATCTTCATCCTGAAAATGACGAGTTACAACCGATTATTGT
CGATCCTCGTATCGAATATATCGAAATTGAAGGAATCGCCGTCGGTGTAATTCGCAATAACGCTTGGATGTAA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(85-200)

LexA DNA binding domain (LexA_DNA_bind)

(4-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3N1B4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

37.864

98.095

0.371