Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AM358_RS18365 Genome accession   NZ_CP026700
Coordinates   3675870..3676475 (+) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Typhimurium strain AR_0031     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3670870..3681475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM358_RS18345 (AM358_18350) - 3671265..3673025 (-) 1761 WP_000156453.1 AAA family ATPase -
  AM358_RS18350 (AM358_18355) matP 3673211..3673663 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  AM358_RS18355 (AM358_18360) ompA 3673735..3674787 (-) 1053 WP_001674965.1 porin OmpA -
  AM358_RS18360 (AM358_18365) sulA 3675144..3675653 (-) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  AM358_RS18365 (AM358_18370) sxy/tfoX 3675870..3676475 (+) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  AM358_RS18370 (AM358_18375) yccS 3676462..3678615 (-) 2154 WP_000950880.1 YccS family putative transporter -
  AM358_RS18375 (AM358_18380) - 3678634..3679080 (-) 447 WP_001261222.1 YccF domain-containing protein -
  AM358_RS18380 (AM358_18385) helD 3679204..3681258 (+) 2055 WP_000420505.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=271796 AM358_RS18365 WP_001202375.1 3675870..3676475(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Typhimurium strain AR_0031]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=271796 AM358_RS18365 WP_001202375.1 3675870..3676475(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Typhimurium strain AR_0031]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment