Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ECHS_RS18945 Genome accession   NC_009800
Coordinates   3841472..3842140 (-) Length   222 a.a.
NCBI ID   WP_012136367.1    Uniprot ID   A8A6A0
Organism   Escherichia coli HS     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3836472..3847140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECHS_RS18915 (EcHS_A3841) rfaQ 3836650..3837708 (-) 1059 WP_000360402.1 lipopolysaccharide core heptosyltransferase RfaQ -
  ECHS_RS18920 (EcHS_A3842) waaA 3838121..3839398 (+) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  ECHS_RS18925 (EcHS_A3843) coaD 3839406..3839885 (+) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  ECHS_RS18930 (EcHS_A3844) mutM 3839924..3840733 (-) 810 WP_001114543.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  ECHS_RS18935 (EcHS_A3845) rpmG 3840831..3840998 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  ECHS_RS18940 (EcHS_A3846) rpmB 3841019..3841255 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  ECHS_RS18945 (EcHS_A3847) radC 3841472..3842140 (-) 669 WP_012136367.1 DNA repair protein RadC Machinery gene
  ECHS_RS18950 (EcHS_A3848) coaBC 3842312..3843532 (+) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  ECHS_RS18955 (EcHS_A3849) dut 3843510..3843968 (+) 459 WP_000976070.1 dUTP diphosphatase -
  ECHS_RS18960 (EcHS_A3850) slmA 3844075..3844671 (+) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  ECHS_RS18965 (EcHS_A3851) pyrE 3844708..3845349 (-) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  ECHS_RS18970 (EcHS_A3852) rph 3845415..3846131 (-) 717 WP_001247089.1 ribonuclease PH -
  ECHS_RS18975 (EcHS_A3853) yicC 3846258..3847121 (+) 864 WP_000621336.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25257.41 Da        Isoelectric Point: 8.9890

>NTDB_id=27178 ECHS_RS18945 WP_012136367.1 3841472..3842140(-) (radC) [Escherichia coli HS]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREKSPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=27178 ECHS_RS18945 WP_012136367.1 3841472..3842140(-) (radC) [Escherichia coli HS]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGTTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTAGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAAAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A8A6A0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496