Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AM352_RS17880 Genome accession   NZ_CP026697
Coordinates   3656173..3656796 (-) Length   207 a.a.
NCBI ID   WP_104868826.1    Uniprot ID   -
Organism   Citrobacter koseri strain AR_0025     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3651173..3661796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM352_RS17865 (AM352_17945) helD 3651414..3653468 (-) 2055 WP_104868825.1 DNA helicase IV -
  AM352_RS17870 (AM352_17950) - 3653592..3654038 (+) 447 WP_012132963.1 YccF domain-containing protein -
  AM352_RS17875 (AM352_17955) yccS 3654057..3656204 (+) 2148 WP_024130467.1 YccS family putative transporter -
  AM352_RS17880 (AM352_17960) sxy/tfoX 3656173..3656796 (-) 624 WP_104868826.1 TfoX/Sxy family DNA transformation protein Regulator
  AM352_RS17885 (AM352_17965) sulA 3657013..3657522 (+) 510 WP_012132966.1 SOS-induced cell division inhibitor SulA -
  AM352_RS17890 (AM352_17970) ompA 3657878..3658924 (+) 1047 WP_047463714.1 porin OmpA -
  AM352_RS17895 (AM352_17975) matP 3658999..3659451 (-) 453 WP_012132968.1 macrodomain Ter protein MatP -
  AM352_RS17900 (AM352_17980) - 3659637..3661397 (+) 1761 WP_104868827.1 Lon protease family protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23981.73 Da        Isoelectric Point: 9.4100

>NTDB_id=271775 AM352_RS17880 WP_104868826.1 3656173..3656796(-) (sxy/tfoX) [Citrobacter koseri strain AR_0025]
MKLRSYDKIYKSQEYLASLGTVHYRSLFGSYSLTIEDTVFAMVAEGELYLRACEQSVAYCVKHSPVWLTFMKRGRPVMLN
YYRVDESLWRDQQQLVLLSQYSLDAAIKEKRTRFSQRRLKNLPNVTFHLENLLHEAGINDENTLRILGAKMCWLRLRESN
KLLTVKILYALEGAIVGVHEAALPAVRRQELAEWAQSLTPEHQKATA

Nucleotide


Download         Length: 624 bp        

>NTDB_id=271775 AM352_RS17880 WP_104868826.1 3656173..3656796(-) (sxy/tfoX) [Citrobacter koseri strain AR_0025]
ATGAAATTACGTTCCTATGACAAGATCTATAAATCGCAAGAATATTTAGCCTCTCTGGGCACGGTTCACTATCGTTCGCT
GTTTGGTAGCTACAGCCTGACAATCGAGGATACGGTGTTTGCGATGGTGGCTGAGGGAGAGCTATACCTGCGCGCCTGTG
AGCAAAGCGTCGCGTACTGCGTGAAGCACTCCCCCGTCTGGTTAACATTTATGAAACGTGGCCGTCCCGTTATGTTGAAT
TATTACCGGGTGGATGAAAGCTTATGGCGTGATCAACAACAGCTGGTGCTTTTATCGCAGTATTCGCTGGATGCTGCCAT
AAAAGAAAAACGTACCCGTTTTTCACAACGTCGATTGAAGAATCTGCCAAACGTGACGTTTCATCTGGAGAACCTTCTGC
ATGAGGCCGGAATTAATGATGAAAACACATTGCGGATACTCGGCGCAAAAATGTGTTGGCTGCGGCTAAGAGAGAGCAAT
AAGCTGCTGACGGTGAAAATTCTCTATGCGTTAGAAGGGGCGATCGTTGGCGTACATGAAGCGGCGCTCCCGGCGGTACG
CCGCCAGGAGCTTGCTGAGTGGGCGCAGTCGCTTACGCCGGAGCACCAGAAGGCGACGGCGTGA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

72.414

98.068

0.71

Multiple sequence alignment