Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   D1111_RS05480 Genome accession   NZ_CP031855
Coordinates   1237476..1238108 (+) Length   210 a.a.
NCBI ID   WP_005601574.1    Uniprot ID   B3GXZ4
Organism   Actinobacillus pleuropneumoniae strain 7311555     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1232476..1243108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1111_RS05465 (D1111_05500) - 1232647..1232838 (-) 192 WP_237601088.1 hypothetical protein -
  D1111_RS10480 - 1232893..1233021 (-) 129 WP_005619459.1 hypothetical protein -
  D1111_RS05470 (D1111_05505) purT 1233541..1234722 (-) 1182 WP_237610168.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  D1111_RS05475 (D1111_05510) plsB 1234845..1237319 (-) 2475 WP_005617596.1 glycerol-3-phosphate 1-O-acyltransferase PlsB -
  D1111_RS05480 (D1111_05515) dinR/lexA 1237476..1238108 (+) 633 WP_005601574.1 transcriptional repressor LexA Regulator
  D1111_RS05485 (D1111_05520) mutH 1238168..1238848 (+) 681 WP_005617598.1 DNA mismatch repair endonuclease MutH -
  D1111_RS05490 (D1111_05525) - 1238934..1239665 (+) 732 WP_005597990.1 TerC family protein -
  D1111_RS05495 (D1111_05530) nagZ 1239780..1240817 (+) 1038 WP_011848533.1 beta-N-acetylhexosaminidase -
  D1111_RS05500 (D1111_05535) rlmC 1240898..1242073 (+) 1176 WP_237610169.1 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23354.73 Da        Isoelectric Point: 5.8460

>NTDB_id=271747 D1111_RS05480 WP_005601574.1 1237476..1238108(+) (dinR/lexA) [Actinobacillus pleuropneumoniae strain 7311555]
MSRKHLTARQQEIFDFVKHHIETTGMPPTRVEIAREIGFKSPNAAEEHLKALARKGYIEMLSGTSRGIRILVDNEETAAN
DDGLPLIGKVAAGTPIMAIEHVESHYPVNGAMFNPNADYLLKVNGNSMEKIGILDGDLLAVHKTNFARNGQVVVARVDDE
VTVKRLEKKGDLIYLHPENDELQPIVVDPRIEYIEIEGIAVGVIRNNAWM

Nucleotide


Download         Length: 633 bp        

>NTDB_id=271747 D1111_RS05480 WP_005601574.1 1237476..1238108(+) (dinR/lexA) [Actinobacillus pleuropneumoniae strain 7311555]
ATGTCACGTAAACACTTAACGGCTCGTCAGCAAGAAATTTTCGATTTTGTTAAACATCACATAGAAACCACCGGTATGCC
GCCGACCCGTGTTGAAATTGCAAGAGAAATCGGTTTTAAATCGCCGAATGCGGCAGAAGAACACTTAAAAGCATTGGCGC
GTAAAGGTTATATCGAAATGCTTTCCGGTACATCGCGCGGAATTCGTATTTTAGTCGATAACGAAGAAACTGCGGCAAAT
GACGACGGTTTACCGTTAATCGGCAAAGTGGCTGCCGGTACGCCGATTATGGCGATTGAACATGTGGAAAGTCATTATCC
GGTAAACGGCGCGATGTTTAATCCGAATGCCGACTATTTGCTCAAAGTAAACGGTAACTCCATGGAAAAAATCGGTATTT
TAGACGGTGACTTACTTGCGGTGCATAAAACCAATTTTGCCCGTAACGGCCAAGTCGTCGTCGCTCGCGTTGATGACGAA
GTGACGGTAAAACGCTTGGAGAAAAAAGGCGACCTTATTTATCTTCATCCTGAAAATGACGAGTTACAACCGATTGTTGT
TGATCCTCGTATCGAATATATCGAAATTGAAGGAATCGCCGTCGGTGTAATTCGCAATAATGCTTGGATGTAA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(4-67)

Peptidase S24-like (Peptidase_S24)

(85-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B3GXZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

37.379

98.095

0.367