Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NPM_RS05260 Genome accession   NZ_CP026681
Coordinates   1217323..1218858 (+) Length   511 a.a.
NCBI ID   WP_104898904.1    Uniprot ID   -
Organism   Nostoc sp. 'Peltigera membranacea cyanobiont' N6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1212323..1223858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPM_RS05230 (NPM_0974) - 1213321..1214052 (+) 732 WP_104898903.1 peptidoglycan-binding protein -
  NPM_RS40380 - 1214084..1214283 (-) 200 Protein_1005 hypothetical protein -
  NPM_RS05240 (NPM_0975) - 1214282..1214500 (-) 219 Protein_1006 IS1 family transposase -
  NPM_RS05245 (NPM_0976) - 1214646..1215569 (+) 924 WP_094331187.1 M48 family metallopeptidase -
  NPM_RS05250 (NPM_0977) - 1215668..1216327 (-) 660 WP_094331188.1 cofactor assembly of complex C subunit B -
  NPM_RS05255 (NPM_0978) - 1216424..1217152 (-) 729 WP_094331209.1 response regulator transcription factor -
  NPM_RS05260 (NPM_0979) radA 1217323..1218858 (+) 1536 WP_104898904.1 DNA repair protein RadA Machinery gene
  NPM_RS05265 (NPM_0980) - 1219180..1220778 (+) 1599 WP_094331190.1 B12-binding domain-containing radical SAM protein -
  NPM_RS05270 (NPM_0981) - 1220929..1222197 (-) 1269 WP_094331191.1 tetratricopeptide repeat protein -
  NPM_RS05275 (NPM_0982) - 1222462..1223610 (+) 1149 WP_104898905.1 DUF711 family protein -

Sequence

Protein


Download         Length: 511 a.a.        Molecular weight: 54835.67 Da        Isoelectric Point: 4.7794

>NTDB_id=271721 NPM_RS05260 WP_104898904.1 1217323..1218858(+) (radA) [Nostoc sp. 'Peltigera membranacea cyanobiont' N6]
MAKPKTFFTCNECGAESPQWFGKCPACGTYNSLEEQISIQSSVDVPSRGGVSSWQSAQGNGKSHAKPAKARASLTFDQIT
DRQIARWESGYGELDRVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSNQLAQKYRILYVTGEESGQQVKLRASRLGVSKTL
GVVNEENEEKVTVVVDPTLPIDPDSIGADLYILPETDLEEILREIDSLKPNVAVIDSIQTVFFPALTSAPGSVAQVRECT
AALMKVAKHEDVTMLIVGHVTKEGAIAGPKVLEHLVDTVLYFEGDRFASHRLLRTVKNRFGATHEIGIFEMVADGLREVD
NPSELFLGNRDDPAPGTAIVVACEGTRPIVVELQALVSPTSYPSPRRAGTGVDYNRLVQILAVLEKRVGIPMSKLDSYVA
SAGGLNVEEPAVDLGIAIAIVASFRDRIVDPGTVLIGEVGLGGQVRSVSQMELRLKEAAKLGFKRAIVPKGTKFPDLNIE
ILPVSKVIDAIIAAIPHQELTADDLEPDEDE

Nucleotide


Download         Length: 1536 bp        

>NTDB_id=271721 NPM_RS05260 WP_104898904.1 1217323..1218858(+) (radA) [Nostoc sp. 'Peltigera membranacea cyanobiont' N6]
ATGGCAAAGCCAAAAACCTTTTTCACTTGTAACGAATGTGGAGCAGAATCGCCCCAGTGGTTTGGTAAGTGTCCAGCTTG
CGGCACATACAACTCTTTAGAAGAACAGATCAGTATTCAGTCTTCAGTAGATGTACCCAGTCGGGGGGGAGTTAGTAGTT
GGCAATCAGCTCAAGGCAATGGTAAATCTCACGCTAAACCAGCTAAAGCACGAGCCTCCTTAACGTTCGATCAAATTACC
GATCGCCAAATAGCTCGATGGGAGTCTGGTTATGGAGAATTAGATCGAGTCCTTGGTGGTGGAGTTGTCCCCGGTTCTAT
GGTGCTGATTGGTGGCGATCCGGGTATTGGGAAATCAACTTTATTGTTGCAAGTATCAAATCAATTAGCACAGAAATATC
GCATTCTTTACGTAACTGGTGAAGAATCGGGACAGCAGGTAAAATTACGAGCTTCTCGTTTGGGAGTATCAAAAACCCTA
GGTGTGGTGAATGAAGAGAATGAGGAGAAGGTAACAGTAGTAGTAGATCCGACACTTCCTATAGACCCTGACAGTATAGG
TGCAGATTTATATATACTGCCAGAAACAGATTTAGAAGAAATTTTACGAGAAATAGATTCTCTAAAGCCAAACGTGGCAG
TGATTGATAGTATCCAAACAGTATTTTTCCCGGCACTGACTTCTGCGCCTGGTTCGGTGGCTCAGGTACGGGAATGTACA
GCAGCATTGATGAAGGTGGCGAAGCATGAAGATGTCACCATGCTGATTGTGGGACATGTCACCAAAGAAGGAGCGATCGC
CGGGCCAAAAGTTTTAGAACATTTAGTCGATACGGTGTTGTATTTTGAAGGCGATCGCTTTGCCTCCCATCGATTATTAC
GCACAGTAAAAAATCGCTTTGGTGCAACTCATGAAATCGGCATCTTTGAAATGGTGGCAGATGGATTGCGAGAAGTTGAT
AACCCCTCAGAATTATTTTTAGGCAACCGTGACGATCCCGCCCCTGGTACGGCTATTGTCGTTGCTTGCGAAGGCACTCG
CCCGATAGTTGTGGAATTGCAAGCTCTTGTAAGTCCCACCAGCTACCCTTCACCTCGTCGGGCTGGTACTGGCGTAGATT
ACAACCGCTTGGTGCAAATCCTCGCCGTCTTAGAAAAACGGGTGGGAATTCCCATGTCGAAGTTAGATTCCTACGTTGCT
TCTGCGGGTGGGTTGAATGTGGAAGAACCGGCGGTAGATTTAGGAATTGCGATCGCGATCGTTGCGAGTTTCCGCGATCG
CATCGTCGATCCCGGTACAGTATTAATCGGTGAAGTTGGGCTAGGCGGACAAGTGCGATCGGTTTCCCAAATGGAACTGC
GGTTAAAAGAAGCTGCTAAGTTGGGATTTAAAAGAGCGATCGTGCCAAAAGGGACAAAATTTCCCGACTTAAATATTGAG
ATATTACCAGTATCTAAAGTAATAGATGCGATTATCGCCGCCATCCCCCATCAAGAATTGACAGCCGACGATTTAGAACC
CGATGAAGATGAGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(405-470)

KaiC (ATPase)

(90-299)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.899

97.26

0.485
  radA Streptococcus mitis SK321

45.547

96.673

0.44
  radA Streptococcus mitis NCTC 12261

47.034

92.368

0.434
  radA Streptococcus pneumoniae Rx1

47.034

92.368

0.434
  radA Streptococcus pneumoniae D39

47.034

92.368

0.434
  radA Streptococcus pneumoniae R6

47.034

92.368

0.434
  radA Streptococcus pneumoniae TIGR4

47.034

92.368

0.434

Multiple sequence alignment