Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   C2I25_RS27470 Genome accession   NZ_CP026678
Coordinates   5218503..5218781 (-) Length   92 a.a.
NCBI ID   WP_000842216.1    Uniprot ID   A0A9W5QHH7
Organism   Bacillus cereus strain TG1-6     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 5213503..5223781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2I25_RS27455 (C2I25_27440) - 5215037..5215696 (-) 660 WP_074047926.1 CatB-related O-acetyltransferase -
  C2I25_RS27460 (C2I25_27445) - 5215949..5216707 (-) 759 WP_000347983.1 TSUP family transporter -
  C2I25_RS27465 (C2I25_27450) - 5216775..5218025 (-) 1251 WP_106825067.1 hypothetical protein -
  C2I25_RS27470 (C2I25_27455) abrB 5218503..5218781 (-) 279 WP_000842216.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  C2I25_RS27475 (C2I25_27460) - 5218922..5219800 (-) 879 WP_000397972.1 helix-turn-helix domain-containing protein -
  C2I25_RS27480 (C2I25_27465) - 5220177..5220428 (+) 252 WP_000827555.1 response regulator transcription factor -
  C2I25_RS27490 (C2I25_27475) - 5220902..5222083 (-) 1182 WP_106825068.1 agmatine/peptidylarginine deiminase -
  C2I25_RS27495 (C2I25_27480) - 5222376..5222978 (-) 603 WP_106825069.1 hypothetical protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10378.28 Da        Isoelectric Point: 10.0092

>NTDB_id=271684 C2I25_RS27470 WP_000842216.1 5218503..5218781(-) (abrB) [Bacillus cereus strain TG1-6]
MKSRGITRKADSMGRIVIPMEIRRSLGIVEKDSLEMFIEEDQIILRKYQSPRACALTGDISDSNISLANGKIIVSPNGME
LLIKKLQQYLLK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=271684 C2I25_RS27470 WP_000842216.1 5218503..5218781(-) (abrB) [Bacillus cereus strain TG1-6]
ATGAAATCAAGAGGAATTACTCGTAAAGCAGATAGCATGGGGCGTATTGTTATTCCAATGGAAATAAGACGGAGTTTAGG
AATTGTAGAAAAAGATTCTCTTGAAATGTTTATAGAAGAGGACCAGATTATTTTACGAAAATATCAATCACCAAGAGCTT
GTGCACTTACAGGGGATATTTCAGACAGCAATATTTCGTTAGCGAATGGGAAGATTATTGTAAGTCCAAACGGGATGGAA
CTGTTAATAAAGAAGTTACAGCAATATCTTTTAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

50

97.826

0.489

Multiple sequence alignment