Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   C2I25_RS19480 Genome accession   NZ_CP026678
Coordinates   3639858..3640292 (+) Length   144 a.a.
NCBI ID   WP_106824229.1    Uniprot ID   -
Organism   Bacillus cereus strain TG1-6     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3634858..3645292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2I25_RS19455 (C2I25_19435) - 3635772..3636935 (-) 1164 WP_106824224.1 aminotransferase A -
  C2I25_RS19460 (C2I25_19440) - 3637058..3637258 (-) 201 WP_000929280.1 hypothetical protein -
  C2I25_RS19465 (C2I25_19445) kinB 3637569..3638843 (+) 1275 WP_000420369.1 sporulation sensor histidine kinase KinB -
  C2I25_RS19470 (C2I25_19450) - 3638882..3639631 (-) 750 WP_106824226.1 DUF3967 domain-containing protein -
  C2I25_RS19480 (C2I25_19460) nucA/comI 3639858..3640292 (+) 435 WP_106824229.1 DNA-entry nuclease Machinery gene
  C2I25_RS19485 (C2I25_19465) - 3640329..3640718 (+) 390 WP_000424024.1 competence protein ComJ -
  C2I25_RS19490 (C2I25_19470) metE 3640757..3643045 (-) 2289 WP_106824231.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  C2I25_RS19495 (C2I25_19475) - 3643557..3644114 (-) 558 WP_000062063.1 PadR family transcriptional regulator -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16084.46 Da        Isoelectric Point: 8.4331

>NTDB_id=271677 C2I25_RS19480 WP_106824229.1 3639858..3640292(+) (nucA/comI) [Bacillus cereus strain TG1-6]
MKQLKGIIISIIAILSILVAVYEVLVPEETSVKKTNTYDQVLEFPKERYPETGKHITDAIKEGHSEVCTIDRGGATDRRK
LSLAPYPSKKGYDRDEWPMAMCKEGGKGAHIEYISPADNRGAGSWVGNKLDKYPDGTRVKFEVK

Nucleotide


Download         Length: 435 bp        

>NTDB_id=271677 C2I25_RS19480 WP_106824229.1 3639858..3640292(+) (nucA/comI) [Bacillus cereus strain TG1-6]
ATGAAGCAATTAAAAGGTATTATCATTTCAATTATCGCAATTCTGTCTATTTTAGTAGCAGTTTATGAAGTACTTGTGCC
AGAGGAAACAAGTGTAAAGAAAACGAATACGTATGATCAAGTGTTAGAATTTCCGAAAGAACGTTATCCAGAGACAGGAA
AACATATTACGGATGCTATAAAAGAAGGGCATTCAGAAGTTTGTACAATCGATCGTGGTGGTGCTACAGATAGAAGGAAA
TTGTCGTTAGCACCGTATCCATCAAAAAAAGGGTATGATCGTGATGAATGGCCAATGGCGATGTGCAAGGAAGGCGGAAA
AGGAGCACATATTGAATATATAAGTCCGGCGGATAACCGGGGAGCAGGCTCTTGGGTAGGGAATAAGTTAGATAAATATC
CAGATGGTACGCGTGTGAAATTTGAAGTGAAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(48-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

69.912

78.472

0.549

Multiple sequence alignment