Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   C2I25_RS18485 Genome accession   NZ_CP026678
Coordinates   3468674..3469468 (+) Length   264 a.a.
NCBI ID   WP_011110369.1    Uniprot ID   A0A9Q5QPF5
Organism   Bacillus cereus strain TG1-6     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 3470060..3486945 3468674..3469468 flank 592


Gene organization within MGE regions


Location: 3468674..3486945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2I25_RS18485 (C2I25_18465) spo0A 3468674..3469468 (+) 795 WP_011110369.1 sporulation transcription factor Spo0A Regulator
  C2I25_RS29160 (C2I25_18475) - 3469808..3469902 (+) 95 Protein_3433 hypothetical protein -
  C2I25_RS18500 (C2I25_18480) - 3470060..3471037 (+) 978 Protein_3434 tyrosine-type recombinase/integrase -
  C2I25_RS18505 (C2I25_18485) - 3471200..3472087 (+) 888 WP_106824107.1 hypothetical protein -
  C2I25_RS18510 (C2I25_18490) - 3472380..3472613 (+) 234 WP_106824109.1 hypothetical protein -
  C2I25_RS18515 (C2I25_18495) - 3472739..3474406 (-) 1668 WP_106824111.1 SIR2 family protein -
  C2I25_RS18520 (C2I25_18500) - 3475153..3475551 (+) 399 WP_098299051.1 helix-turn-helix domain-containing protein -
  C2I25_RS18525 (C2I25_18505) - 3476338..3477576 (+) 1239 WP_106824113.1 phage portal protein -
  C2I25_RS18530 (C2I25_18510) - 3477551..3479029 (+) 1479 WP_106824115.1 phage major capsid protein -
  C2I25_RS18535 (C2I25_18515) - 3479118..3479525 (+) 408 WP_106824117.1 phage major tail protein, TP901-1 family -
  C2I25_RS18540 (C2I25_18520) - 3479600..3479908 (+) 309 WP_106824119.1 head-tail connector protein -
  C2I25_RS18545 (C2I25_18525) - 3479935..3480168 (+) 234 WP_106824121.1 hypothetical protein -
  C2I25_RS18550 (C2I25_18530) - 3480355..3480720 (+) 366 WP_106824123.1 phage terminase small subunit P27 family -
  C2I25_RS18555 (C2I25_18535) - 3480717..3480959 (+) 243 WP_106824125.1 hypothetical protein -
  C2I25_RS28905 - 3481190..3481366 (-) 177 WP_189339992.1 hypothetical protein -
  C2I25_RS18560 (C2I25_18540) - 3482106..3482828 (+) 723 WP_098077804.1 hypothetical protein -
  C2I25_RS29300 - 3482809..3482943 (+) 135 WP_262984023.1 hypothetical protein -
  C2I25_RS18565 (C2I25_18545) - 3483063..3483623 (+) 561 WP_106824128.1 hypothetical protein -
  C2I25_RS18570 (C2I25_18550) - 3484033..3485559 (+) 1527 WP_106824130.1 glycosyltransferase family 39 protein -
  C2I25_RS18575 (C2I25_18555) - 3485737..3485883 (-) 147 WP_001247671.1 YycC family protein -
  C2I25_RS18580 (C2I25_18560) - 3485934..3486662 (+) 729 WP_000172589.1 glycerophosphodiester phosphodiesterase -
  C2I25_RS18585 (C2I25_18565) - 3486712..3486945 (-) 234 WP_001190211.1 DUF2627 domain-containing protein -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29415.18 Da        Isoelectric Point: 7.1175

>NTDB_id=271676 C2I25_RS18485 WP_011110369.1 3468674..3469468(+) (spo0A) [Bacillus cereus strain TG1-6]
MEKIKVCLVDDNKELVSMLESYVAAQDDMEVIGTAYNGQECLNLLTDKQPDVLVLDIIMPHLDGLAVLEKMRHIERLKQP
SVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQVSGKANAMIKRPLPSFRSATTVDGKPKNLDASITSIIHE
IGVPAHIKGYMYLREAISMVYNDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMS
KAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 795 bp        

>NTDB_id=271676 C2I25_RS18485 WP_011110369.1 3468674..3469468(+) (spo0A) [Bacillus cereus strain TG1-6]
GTGGAGAAAATTAAAGTATGTCTTGTGGATGATAATAAAGAACTAGTATCAATGTTAGAGAGCTATGTAGCTGCTCAAGA
TGATATGGAAGTAATCGGTACTGCTTATAATGGTCAAGAGTGTTTAAACTTATTAACAGATAAGCAACCTGATGTACTCG
TTTTAGACATTATTATGCCACACTTAGATGGTTTAGCTGTATTGGAAAAAATGCGACATATTGAAAGGTTAAAACAGCCT
AGCGTAATTATGTTGACAGCATTCGGGCAAGAAGATGTGACGAAAAAAGCAGTTGACTTAGGTGCCTCATATTTCATATT
AAAACCATTTGATATGGAGAATTTAACGAGTCATATTCGTCAAGTGAGTGGTAAAGCAAATGCTATGATTAAACGTCCAC
TACCATCATTCCGATCAGCAACAACAGTAGATGGAAAACCGAAAAATTTAGATGCGAGTATTACGAGTATCATTCATGAA
ATTGGTGTACCCGCTCATATTAAAGGATATATGTATTTACGAGAAGCAATCTCCATGGTATACAACGATATCGAATTATT
AGGATCGATTACGAAAGTATTGTATCCAGATATCGCAAAGAAATATAATACCACAGCAAGCCGTGTGGAGCGAGCAATTC
GTCACGCGATTGAAGTAGCTTGGAGCCGTGGGAATATTGATTCTATTTCGTCCTTATTCGGTTATACAGTATCCATGTCA
AAAGCAAAACCTACGAACTCTGAGTTTATCGCAATGGTTGCGGATAAGCTGAGACTTGAACATAAGGCTTCGTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(154-257)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

80.899

100

0.818

Multiple sequence alignment