Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   C2I25_RS17810 Genome accession   NZ_CP026678
Coordinates   3361047..3361793 (+) Length   248 a.a.
NCBI ID   WP_000487009.1    Uniprot ID   -
Organism   Bacillus cereus strain TG1-6     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 3356047..3366793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2I25_RS17780 (C2I25_17765) - 3356336..3358480 (+) 2145 WP_000091512.1 HD family phosphohydrolase -
  C2I25_RS17785 (C2I25_17770) ybeY 3358477..3358947 (+) 471 WP_000054684.1 rRNA maturation RNase YbeY -
  C2I25_RS17790 (C2I25_17775) - 3358944..3359297 (+) 354 WP_000715464.1 diacylglycerol kinase family protein -
  C2I25_RS17795 (C2I25_17780) - 3359397..3359795 (+) 399 WP_001086285.1 cytidine deaminase -
  C2I25_RS17800 (C2I25_17785) era 3359788..3360693 (+) 906 WP_001080230.1 GTPase Era -
  C2I25_RS17805 (C2I25_17790) - 3360870..3361013 (+) 144 WP_000883924.1 YqzL family protein -
  C2I25_RS17810 (C2I25_17795) recO 3361047..3361793 (+) 747 WP_000487009.1 DNA repair protein RecO Machinery gene
  C2I25_RS17815 (C2I25_17800) - 3361901..3362533 (+) 633 WP_000583756.1 helix-turn-helix transcriptional regulator -
  C2I25_RS17820 (C2I25_17805) - 3362563..3363375 (+) 813 WP_000368944.1 pyruvate, water dikinase regulatory protein -
  C2I25_RS28900 - 3364011..3364154 (+) 144 WP_000479734.1 hypothetical protein -
  C2I25_RS17835 (C2I25_17820) dnaG 3364236..3366032 (+) 1797 WP_000528221.1 DNA primase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28618.21 Da        Isoelectric Point: 8.0566

>NTDB_id=271673 C2I25_RS17810 WP_000487009.1 3361047..3361793(+) (recO) [Bacillus cereus strain TG1-6]
MFQKVEGIVIRTTDYGETNKIVTIFSRELGKVSAMARGAKKPKSRLASVSQLMTHGHFLIQMGSGLGTLQQGEIISTMKE
IREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLYQTLHYMCEGVDPEVLSLIYQTKMLPVLGMRPYFDTCAICHQETD
FVAFSVREGGFLCSRHAEQDPYRIPVGEAVHKLLRLFFHFDLHRLGNVSVKDSTKKQMRLVLNTYYDEYCGIYLKSRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=271673 C2I25_RS17810 WP_000487009.1 3361047..3361793(+) (recO) [Bacillus cereus strain TG1-6]
ATGTTTCAAAAAGTTGAGGGCATCGTTATCCGTACGACAGATTACGGAGAAACGAACAAGATTGTTACAATATTCTCAAG
AGAACTTGGTAAGGTAAGTGCAATGGCAAGAGGGGCAAAAAAACCGAAAAGCCGATTAGCATCTGTGTCGCAATTAATGA
CACATGGCCATTTTCTTATTCAAATGGGATCTGGGCTTGGAACATTGCAACAAGGCGAGATTATTTCAACTATGAAAGAA
ATTCGCGAGGATATATTTTTAACTGCTTATGCATCATTTATTGTTGAGTTAACTGATAAAGCAACAGAAGATAAAAAACA
TAATCCGTATTTATTTGAAATGTTATATCAAACGTTGCATTATATGTGTGAGGGTGTTGATCCAGAAGTATTATCATTAA
TTTATCAAACGAAAATGCTTCCGGTATTAGGGATGCGCCCGTACTTTGATACATGTGCGATTTGTCATCAAGAAACAGAC
TTTGTCGCCTTCTCCGTAAGGGAAGGCGGTTTTCTGTGCTCACGTCATGCAGAGCAAGACCCATATCGTATACCGGTAGG
AGAAGCTGTTCATAAATTATTACGTCTTTTCTTCCATTTCGATTTACATAGGCTCGGAAATGTATCGGTAAAGGATAGCA
CAAAAAAACAAATGCGTTTAGTATTGAATACATATTATGATGAATATTGCGGAATTTATTTGAAATCAAGACGTTTTTTA
GAACAACTTGATAAGTTTCAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

55.466

99.597

0.552

Multiple sequence alignment