Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   C2I25_RS11430 Genome accession   NZ_CP026678
Coordinates   2178725..2179009 (+) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus cereus strain TG1-6     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2173725..2184009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2I25_RS11415 (C2I25_11410) rnmV 2174549..2175106 (-) 558 WP_000692837.1 ribonuclease M5 -
  C2I25_RS11420 (C2I25_11415) - 2175322..2176089 (-) 768 WP_000895840.1 TatD family hydrolase -
  C2I25_RS11425 (C2I25_11420) metG 2176256..2178238 (-) 1983 WP_231690753.1 methionine--tRNA ligase -
  C2I25_RS11430 (C2I25_11425) abrB 2178725..2179009 (+) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  C2I25_RS11435 (C2I25_11430) rsmI 2179030..2179905 (-) 876 WP_000267824.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  C2I25_RS11440 (C2I25_11435) - 2179874..2180164 (-) 291 WP_000414350.1 GIY-YIG nuclease family protein -
  C2I25_RS11445 (C2I25_11440) - 2180151..2180891 (-) 741 WP_001055355.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  C2I25_RS11450 (C2I25_11445) yabA 2180974..2181324 (-) 351 WP_000412063.1 DNA replication initiation control protein YabA -
  C2I25_RS11455 (C2I25_11450) - 2181339..2182166 (-) 828 WP_000272429.1 stage 0 sporulation family protein -
  C2I25_RS11460 (C2I25_11455) holB 2182172..2183155 (-) 984 WP_106823391.1 DNA polymerase III subunit delta' -
  C2I25_RS11465 (C2I25_11460) tmk 2183191..2183817 (-) 627 WP_000677220.1 dTMP kinase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=271655 C2I25_RS11430 WP_000843036.1 2178725..2179009(+) (abrB) [Bacillus cereus strain TG1-6]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=271655 C2I25_RS11430 WP_000843036.1 2178725..2179009(+) (abrB) [Bacillus cereus strain TG1-6]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGACGCTCTTGAAATCTATGTTGATGACGAAAAAATCATCTTAAAGAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGACGGTAACCTTTCTTTAGCTGAAGGTAAAATCATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851

Multiple sequence alignment