Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   C2I25_RS05010 Genome accession   NZ_CP026678
Coordinates   962585..962908 (+) Length   107 a.a.
NCBI ID   WP_000578885.1    Uniprot ID   A0A9W5VG71
Organism   Bacillus cereus strain TG1-6     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 957585..967908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2I25_RS04995 (C2I25_04995) - 958099..959466 (-) 1368 WP_069355257.1 aldehyde dehydrogenase -
  C2I25_RS05000 (C2I25_05000) inhA1 959638..962028 (-) 2391 WP_106822706.1 M6 family metalloprotease immune inhibitor InhA1 -
  C2I25_RS05005 (C2I25_05005) - 962371..962505 (+) 135 WP_000276219.1 anti-repressor SinI family protein -
  C2I25_RS05010 (C2I25_05010) sinR 962585..962908 (+) 324 WP_000578885.1 helix-turn-helix domain-containing protein Regulator
  C2I25_RS05015 (C2I25_05015) calY 962981..963574 (-) 594 WP_000053715.1 biofilm matrix protein CalY -
  C2I25_RS05020 (C2I25_05020) - 963919..964776 (-) 858 WP_145959691.1 DUF4047 domain-containing protein -
  C2I25_RS05025 (C2I25_05025) - 964911..965498 (-) 588 WP_000172852.1 CalY family protein -
  C2I25_RS05030 (C2I25_05030) sipW 965559..966128 (-) 570 WP_000767792.1 signal peptidase I SipW -
  C2I25_RS05035 (C2I25_05035) - 966319..967605 (-) 1287 WP_106822710.1 D-alanyl-D-alanine carboxypeptidase family protein -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12349.19 Da        Isoelectric Point: 9.6244

>NTDB_id=271639 C2I25_RS05010 WP_000578885.1 962585..962908(+) (sinR) [Bacillus cereus strain TG1-6]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKETNLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=271639 C2I25_RS05010 WP_000578885.1 962585..962908(+) (sinR) [Bacillus cereus strain TG1-6]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGGATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAAATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAACTAACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAGTGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692

Multiple sequence alignment