Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   C4Q27_RS13955 Genome accession   NZ_CP026675
Coordinates   2909539..2909940 (+) Length   133 a.a.
NCBI ID   WP_010955560.1    Uniprot ID   -
Organism   Pseudomonas sp. SWI36     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2904539..2914940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4Q27_RS13920 (C4Q27_13920) - 2904599..2905603 (-) 1005 WP_003249311.1 aspartate carbamoyltransferase catalytic subunit -
  C4Q27_RS13925 (C4Q27_13925) pyrR 2905616..2906134 (-) 519 WP_020191541.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  C4Q27_RS13930 (C4Q27_13930) ruvX 2906184..2906609 (-) 426 WP_010955563.1 Holliday junction resolvase RuvX -
  C4Q27_RS13935 (C4Q27_13935) - 2906609..2907178 (-) 570 WP_003249318.1 YqgE/AlgH family protein -
  C4Q27_RS13945 (C4Q27_13945) - 2907350..2908255 (-) 906 WP_014592660.1 energy transducer TonB -
  C4Q27_RS13950 (C4Q27_13950) gshB 2908347..2909300 (-) 954 WP_010955561.1 glutathione synthase -
  C4Q27_RS13955 (C4Q27_13955) pilG 2909539..2909940 (+) 402 WP_010955560.1 PleD family two-component system response regulator Regulator
  C4Q27_RS13960 (C4Q27_13960) pilH 2909988..2910353 (+) 366 WP_003249327.1 twitching motility response regulator PilH -
  C4Q27_RS13965 (C4Q27_13965) - 2910350..2910904 (+) 555 WP_010955559.1 chemotaxis protein CheW -
  C4Q27_RS13970 (C4Q27_13970) - 2910952..2912976 (+) 2025 WP_231114307.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14602.85 Da        Isoelectric Point: 6.4772

>NTDB_id=271602 C4Q27_RS13955 WP_010955560.1 2909539..2909940(+) (pilG) [Pseudomonas sp. SWI36]
MEQPLKVMVIDDSRTIRRTAQMLLGEAGCEVITASDGFDALAKIVDHQPSIIFVDVLMPRLDGYQTCAVIKHNSAFKDTP
VILLSSRDGLFDKARGRVVGSDQFLTKPFSKEELLDAIRAHVPGFAAPQQHAP

Nucleotide


Download         Length: 402 bp        

>NTDB_id=271602 C4Q27_RS13955 WP_010955560.1 2909539..2909940(+) (pilG) [Pseudomonas sp. SWI36]
ATGGAACAACCCCTGAAGGTGATGGTGATCGACGATTCCCGCACGATCCGCCGCACCGCGCAGATGTTGCTCGGTGAAGC
GGGCTGCGAGGTGATCACCGCCAGCGATGGCTTCGATGCCCTGGCCAAGATCGTCGACCATCAGCCCAGCATCATTTTCG
TCGATGTGCTGATGCCACGCCTGGACGGCTACCAGACCTGCGCGGTAATCAAGCACAACAGTGCCTTCAAGGACACCCCG
GTTATCCTGCTGTCGTCCCGCGATGGCCTGTTCGACAAGGCCCGCGGGCGGGTGGTCGGTTCCGATCAGTTCCTGACCAA
ACCGTTCAGCAAGGAAGAACTGCTCGACGCGATCCGCGCCCATGTGCCCGGGTTTGCCGCACCTCAACAACACGCACCCT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

70

90.226

0.632

Multiple sequence alignment