Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   BL14DL4_RS00165 Genome accession   NZ_CP026673
Coordinates   21508..21990 (+) Length   160 a.a.
NCBI ID   WP_009328420.1    Uniprot ID   -
Organism   Bacillus licheniformis strain 14ADL4     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 16508..26990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BL14DL4_RS00135 (BL14DL4_00029) - 16607..17596 (+) 990 WP_009328425.1 HNH endonuclease signature motif containing protein -
  BL14DL4_RS00140 (BL14DL4_00030) - 17613..18173 (+) 561 WP_009328424.1 SMI1/KNR4 family protein -
  BL14DL4_RS00145 (BL14DL4_00031) - 18332..20287 (+) 1956 WP_009328423.1 T7SS effector LXG polymorphic toxin -
  BL14DL4_RS23440 (BL14DL4_00032) - 20302..20487 (+) 186 WP_325044600.1 SMI1/KNR4 family protein -
  BL14DL4_RS23445 - 20478..20723 (+) 246 WP_325044602.1 SMI1/KNR4 family protein -
  BL14DL4_RS00155 (BL14DL4_00033) - 20764..21222 (+) 459 WP_009328421.1 SMI1/KNR4 family protein -
  BL14DL4_RS00165 (BL14DL4_00034) rok 21508..21990 (+) 483 WP_009328420.1 hypothetical protein Regulator
  BL14DL4_RS00170 (BL14DL4_00035) - 22060..22413 (+) 354 WP_009328419.1 hypothetical protein -
  BL14DL4_RS00175 (BL14DL4_00036) - 22555..23814 (+) 1260 WP_009328418.1 MFS transporter -
  BL14DL4_RS00180 (BL14DL4_00037) - 23925..25031 (+) 1107 WP_009328417.1 tetratricopeptide repeat protein -
  BL14DL4_RS23340 (BL14DL4_00038) - 25028..25156 (+) 129 WP_021837855.1 hypothetical protein -
  BL14DL4_RS23450 - 25591..25674 (-) 84 WP_073411138.1 putative holin-like toxin -
  BL14DL4_RS00190 (BL14DL4_00039) - 25877..26176 (-) 300 WP_034291560.1 hypothetical protein -
  BL14DL4_RS00195 (BL14DL4_00040) - 26195..26449 (-) 255 WP_009328416.1 phage holin -
  BL14DL4_RS00200 (BL14DL4_00041) - 26468..26854 (-) 387 WP_021837858.1 hypothetical protein -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 18464.27 Da        Isoelectric Point: 10.5742

>NTDB_id=271491 BL14DL4_RS00165 WP_009328420.1 21508..21990(+) (rok) [Bacillus licheniformis strain 14ADL4]
MFNEREALRLRLEQLNDKEIIVMRELREEREGIYSKLRELDKNQSNPPQVRESSSLMDLVSAAAQELKQSKSSSPRIQTN
NASQPFNKSITSIQREAALKILSMHKEGIRGAGLRKEIEKETGMKVKNMTTFMSGLMKHHPEIKKPGRGHYVIKREKSFE

Nucleotide


Download         Length: 483 bp        

>NTDB_id=271491 BL14DL4_RS00165 WP_009328420.1 21508..21990(+) (rok) [Bacillus licheniformis strain 14ADL4]
ATGTTTAATGAACGAGAAGCGTTACGTTTGAGGCTTGAGCAGCTAAACGATAAAGAAATTATTGTCATGAGAGAGCTCAG
AGAAGAACGAGAAGGTATTTATTCAAAGTTGCGCGAGTTGGACAAAAACCAGAGTAATCCTCCTCAAGTCAGAGAAAGCT
CTTCATTGATGGATTTAGTTAGCGCAGCAGCCCAAGAATTGAAACAGTCTAAAAGCTCATCTCCACGCATTCAGACAAAC
AATGCCTCGCAACCCTTTAATAAGTCTATAACATCTATACAGCGTGAAGCAGCACTTAAAATATTGAGTATGCATAAAGA
AGGCATTAGAGGGGCAGGGCTTCGTAAGGAAATTGAGAAAGAAACAGGCATGAAAGTTAAAAATATGACAACTTTTATGA
GCGGACTCATGAAACACCATCCTGAAATCAAAAAACCAGGCCGCGGTCATTATGTTATTAAGCGTGAAAAGTCCTTTGAG
TAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

42.623

100

0.488

Multiple sequence alignment