Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   C4N11_RS09755 Genome accession   NZ_CP026670
Coordinates   1847309..1848235 (-) Length   308 a.a.
NCBI ID   WP_001291293.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain endophthalmitis isolate 335     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1842309..1853235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4N11_RS09735 (C4N11_09735) treR 1843417..1844127 (+) 711 WP_000760670.1 trehalose operon repressor Regulator
  C4N11_RS09740 (C4N11_09740) - 1844160..1844963 (-) 804 WP_000202629.1 ABC transporter ATP-binding protein -
  C4N11_RS09745 (C4N11_09745) - 1844976..1845869 (-) 894 WP_001012089.1 ABC transporter permease -
  C4N11_RS09750 (C4N11_09750) - 1845881..1846818 (-) 938 Protein_1849 ABC transporter substrate-binding protein -
  C4N11_RS09755 (C4N11_09755) amiF 1847309..1848235 (-) 927 WP_001291293.1 ATP-binding cassette domain-containing protein Regulator
  C4N11_RS09760 (C4N11_09760) amiE 1848246..1849313 (-) 1068 WP_000159556.1 ABC transporter ATP-binding protein Regulator
  C4N11_RS09765 (C4N11_09765) amiD 1849322..1850248 (-) 927 WP_000103700.1 oligopeptide ABC transporter permease OppC Regulator
  C4N11_RS09770 (C4N11_09770) - 1850248..1851744 (-) 1497 Protein_1853 ABC transporter permease -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34796.85 Da        Isoelectric Point: 6.6224

>NTDB_id=271448 C4N11_RS09755 WP_001291293.1 1847309..1848235(-) (amiF) [Streptococcus pneumoniae strain endophthalmitis isolate 335]
MSEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGDIIFDGQKINGKKSRE
QAAELIRRIQMIFQDPAASLNERATVDYIISEGLYNHRLFKDEEERKEKVQNIIREVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMQPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQALLSAVPIPDPILERKKVLKVYDPSQHDYETDKPSMVEIRPGHYVWANQAELARYQKGLN

Nucleotide


Download         Length: 927 bp        

>NTDB_id=271448 C4N11_RS09755 WP_001291293.1 1847309..1848235(-) (amiF) [Streptococcus pneumoniae strain endophthalmitis isolate 335]
ATGTCTGAAAAATTAGTAGAAATCAAAGATTTAGAAATTTCCTTCGGTGAAGGAAGTAAGAAGTTTGTCGCGGTTAAAAA
TGCTAACTTCTTTATCAACAAGGGAGAAACTTTCTCGCTTGTAGGTGAGTCCGGTAGTGGGAAAACAACTATTGGTCGTG
CTATCATCGGTCTAAATGATACAAGTAATGGAGATATCATTTTTGATGGTCAAAAGATTAATGGTAAGAAATCGCGTGAA
CAAGCTGCGGAATTGATTCGTCGAATCCAGATGATTTTCCAAGACCCTGCCGCAAGTTTGAATGAACGTGCGACTGTTGA
TTATATTATTTCTGAAGGTCTTTACAATCACCGTTTATTTAAGGATGAAGAAGAACGTAAAGAGAAAGTTCAAAATATTA
TCCGTGAAGTAGGTCTTCTTGCTGAGCACTTGACTCGTTACCCTCATGAATTCTCAGGCGGTCAACGTCAACGTATCGGT
ATTGCCCGTGCCTTGGTCATGCAACCAGACTTTGTTATTGCAGATGAGCCAATTTCAGCCTTGGACGTTTCTGTACGTGC
CCAAGTCTTGAACTTGCTCAAAAAATTCCAAAAAGAGCTCGGCCTGACCTATCTCTTCATCGCCCATGACTTGTCGGTTG
TTCGCTTTATTTCAGATCGTATCGCAGTTATTTACAAGGGTGTTATTGTAGAGGTTGCAGAAACAGAAGAATTGTTTAAC
AATCCAATTCACCCATATACTCAAGCCTTGCTTTCAGCGGTACCAATCCCAGATCCAATTTTGGAACGTAAGAAGGTCTT
GAAGGTTTACGATCCAAGTCAACACGACTATGAGACTGATAAGCCATCTATGGTAGAAATCCGTCCAGGTCACTATGTTT
GGGCGAACCAAGCCGAATTGGCACGTTATCAAAAAGGACTAAACTAG

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

85.574

99.026

0.847
  amiF Streptococcus salivarius strain HSISS4

85.574

99.026

0.847
  amiF Streptococcus thermophilus LMD-9

85.246

99.026

0.844

Multiple sequence alignment