Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   D0R13_RS05560 Genome accession   NZ_CP031833
Coordinates   1086529..1087044 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain 2452     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1081529..1092044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0R13_RS05515 csrA 1082116..1082301 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  D0R13_RS05545 yqaB 1083759..1084325 (+) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  D0R13_RS05550 yqaA 1084322..1084750 (+) 429 WP_001287454.1 YqaA family protein -
  D0R13_RS05555 gshA 1084823..1086379 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  D0R13_RS05560 luxS 1086529..1087044 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  D0R13_RS05565 emrB 1087108..1088646 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  D0R13_RS05570 emrA 1088663..1089835 (-) 1173 WP_001326681.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  D0R13_RS05575 emrR 1089962..1090492 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  D0R13_RS05580 ygaH 1090583..1090918 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  D0R13_RS05585 ygaZ 1090908..1091645 (-) 738 WP_000445651.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=271379 D0R13_RS05560 WP_001130211.1 1086529..1087044(+) (luxS) [Escherichia coli strain 2452]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=271379 D0R13_RS05560 WP_001130211.1 1086529..1087044(+) (luxS) [Escherichia coli strain 2452]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment