Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   D0R13_RS05285 Genome accession   NZ_CP031833
Coordinates   1033710..1034702 (+) Length   330 a.a.
NCBI ID   WP_000081550.1    Uniprot ID   A0A370V765
Organism   Escherichia coli strain 2452     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 1028710..1039702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0R13_RS05255 ispD 1028771..1029481 (+) 711 WP_000246138.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  D0R13_RS05260 ispF 1029481..1029960 (+) 480 WP_001219242.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  D0R13_RS05265 truD 1029957..1031006 (+) 1050 WP_000568943.1 tRNA pseudouridine(13) synthase TruD -
  D0R13_RS05270 surE 1030987..1031748 (+) 762 WP_001295182.1 5'/3'-nucleotidase SurE -
  D0R13_RS05275 pcm 1031742..1032368 (+) 627 WP_000254708.1 protein-L-isoaspartate O-methyltransferase -
  D0R13_RS05280 nlpD 1032553..1033647 (+) 1095 WP_306174120.1 murein hydrolase activator NlpD -
  D0R13_RS05285 rpoS 1033710..1034702 (+) 993 WP_000081550.1 RNA polymerase sigma factor RpoS Regulator
  D0R13_RS05290 ygbN 1034796..1036160 (-) 1365 WP_000104441.1 GntP family transporter -
  D0R13_RS05295 ygbM 1036249..1037025 (-) 777 WP_001136934.1 HPr family phosphocarrier protein -
  D0R13_RS05300 ygbL 1037030..1037668 (-) 639 WP_001278994.1 aldolase -
  D0R13_RS05305 otnK 1037665..1038927 (-) 1263 WP_004017547.1 3-oxo-tetronate kinase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 37972.84 Da        Isoelectric Point: 4.5597

>NTDB_id=271376 D0R13_RS05285 WP_000081550.1 1033710..1034702(+) (rpoS) [Escherichia coli strain 2452]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide


Download         Length: 993 bp        

>NTDB_id=271376 D0R13_RS05285 WP_000081550.1 1033710..1034702(+) (rpoS) [Escherichia coli strain 2452]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(174-248)

Sigma-70 region 2 (Sigma70_r2)

(94-163)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(56-88)

Sigma-70, region 4 (Sigma70_r4)

(262-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V765

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

73.065

97.879

0.715