Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   D0R13_RS04095 Genome accession   NZ_CP031833
Coordinates   788666..789907 (-) Length   413 a.a.
NCBI ID   WP_094319351.1    Uniprot ID   -
Organism   Escherichia coli strain 2452     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 783666..794907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0R13_RS04075 glf 783957..785063 (+) 1107 WP_000272502.1 UDP-galactopyranose mutase -
  D0R13_RS04080 - 785090..785758 (+) 669 WP_001025464.1 acyltransferase -
  D0R13_RS04085 - 785907..787076 (+) 1170 WP_000704785.1 nucleotide sugar dehydrogenase -
  D0R13_RS04090 - 787205..788545 (+) 1341 WP_001361241.1 glycosyltransferase family A protein -
  D0R13_RS04095 kpsS 788666..789907 (-) 1242 WP_094319351.1 capsular biosynthesis protein Regulator
  D0R13_RS04100 - 789942..791969 (-) 2028 WP_016242962.1 capsular polysaccharide biosynthesis protein -
  D0R13_RS04105 kdsB 791966..792706 (-) 741 WP_001554265.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  D0R13_RS04110 - 792716..794392 (-) 1677 WP_001301060.1 polysaccharide biosynthesis/export family protein -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 49177.01 Da        Isoelectric Point: 10.1230

>NTDB_id=271372 D0R13_RS04095 WP_094319351.1 788666..789907(-) (kpsS) [Escherichia coli strain 2452]
MQGNALTVLLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHLQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPTPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVKTQVNGVYYGEMIFNKIKKD
KKDCIMLSKKTSQ

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=271372 D0R13_RS04095 WP_094319351.1 788666..789907(-) (kpsS) [Escherichia coli strain 2452]
ATGCAAGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCGATGGGACCTTTTTTCAA
TGACGTCGCCGAATGGTTAGAGTCATTAGGACGTAACGCTGTGAATGTTGTATTCAACGGTGGGGATCGTTTTTACTGCC
GCCATCTACAATACCTGGCTTACTACCAAACGCCGAAAGAGTTTCCCGGATGGTTACGGGATCTCCATCGGCAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAACGCTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAGGAAGGATATTTACGCCCGCAATTTATTACCGTTGAAGAAGGCGGAGTAAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTACGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGTATAGGTCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGCCATGAGTTCCCTCGCTACCGCCACCATAA
ATCGTTTTCCCCCTGGTATGAAGCACGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTACCGAGGTTAATGAACGAGTTGGACCAGCGTTATTATCTTGCCGTTTTGCAGGTATATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCGCGTAAAGCGCCGAAAGA
AAGTTATTTGGTGATCAAACATCATCCGATGGATCGCGGTCACAGACTCTATCGACCATTAATTAAGCGGCTAAGTAAGG
AATATGGCTTAGGTGAGCGAGTCATTTATGTGCACGATCTCCCGATGCCGGAATTATTACGCCACGCAAAAGCGGTGGTG
ACGATTAACAGTACGGCGGGGATCTCTGCACTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAAGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCGGATATGAAACTGTTTAAGAAGT
TTCGTGGGTATTTATTGGTGAAGACGCAGGTTAATGGGGTTTATTATGGGGAGATGATTTTTAACAAGATAAAAAAAGAT
AAAAAAGATTGTATTATGCTATCAAAAAAAACATCACAATGA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.646

95.884

0.38