Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   D0R13_RS00375 Genome accession   NZ_CP031833
Coordinates   70736..71404 (+) Length   222 a.a.
NCBI ID   WP_001350561.1    Uniprot ID   B1X972
Organism   Escherichia coli strain 2452     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 65736..76404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0R13_RS00340 yicC 65755..66618 (-) 864 WP_117355223.1 YicC/YloC family endoribonuclease -
  D0R13_RS00350 rph 66745..67461 (+) 717 WP_001247097.1 ribonuclease PH -
  D0R13_RS00355 pyrE 67527..68168 (+) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  D0R13_RS00360 slmA 68205..68801 (-) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  D0R13_RS00365 dut 68908..69366 (-) 459 WP_000976073.1 dUTP diphosphatase -
  D0R13_RS00370 coaBC 69344..70564 (-) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  D0R13_RS00375 radC 70736..71404 (+) 669 WP_001350561.1 DNA repair protein RadC Machinery gene
  D0R13_RS00380 rpmB 71621..71857 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  D0R13_RS00385 rpmG 71878..72045 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  D0R13_RS00390 mutM 72143..72952 (+) 810 WP_001114543.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  D0R13_RS00395 coaD 72991..73470 (-) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  D0R13_RS00400 waaA 73478..74755 (-) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  D0R13_RS00405 rfaQ 75161..76231 (+) 1071 WP_001350560.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25343.46 Da        Isoelectric Point: 8.4958

>NTDB_id=271358 D0R13_RS00375 WP_001350561.1 70736..71404(+) (radC) [Escherichia coli strain 2452]
MKNNSQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHRRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=271358 D0R13_RS00375 WP_001350561.1 70736..71404(+) (radC) [Escherichia coli strain 2452]
GTGAAAAACAATTCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACCGGG
TTATAACGCATAGGCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(9-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B1X972

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496