Detailed information
Bioinformatically predicted
Overview
| Name | radA | Type | Machinery gene |
| Locus tag | C4H08_RS13635 | Genome accession | NZ_CP026665 |
| Coordinates | 2781491..2782852 (-) | Length | 453 a.a. |
| NCBI ID | WP_010930258.1 | Uniprot ID | A0AAI9J212 |
| Organism | Bordetella pertussis strain J379 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2781491..2834491 | 2781491..2782852 | within | 0 |
Gene organization within MGE regions
Location: 2781491..2834491
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C4H08_RS13635 (C4H08_13610) | radA | 2781491..2782852 (-) | 1362 | WP_010930258.1 | DNA repair protein RadA | Machinery gene |
| C4H08_RS13640 (C4H08_13615) | - | 2783017..2784693 (+) | 1677 | WP_019247748.1 | vWA domain-containing protein | - |
| C4H08_RS13645 (C4H08_13620) | - | 2784771..2785349 (+) | 579 | WP_010926777.1 | RNA polymerase sigma factor | - |
| C4H08_RS13650 (C4H08_13625) | - | 2785346..2786296 (-) | 951 | WP_005013747.1 | IS481-like element IS481 family transposase | - |
| C4H08_RS13655 (C4H08_13630) | - | 2786402..2787094 (+) | 693 | WP_010930257.1 | membrane protein | - |
| C4H08_RS13660 (C4H08_13635) | - | 2787108..2787824 (-) | 717 | WP_003810494.1 | SDR family oxidoreductase | - |
| C4H08_RS13665 (C4H08_13640) | alr | 2787976..2789103 (-) | 1128 | WP_003810492.1 | alanine racemase | - |
| C4H08_RS13670 (C4H08_13645) | hpnC | 2789232..2790062 (+) | 831 | WP_003810490.1 | squalene synthase HpnC | - |
| C4H08_RS13675 (C4H08_13650) | hpnD | 2790064..2790927 (+) | 864 | WP_010930256.1 | presqualene diphosphate synthase HpnD | - |
| C4H08_RS13680 (C4H08_13655) | hpnE | 2790924..2792255 (+) | 1332 | WP_010930255.1 | hydroxysqualene dehydroxylase HpnE | - |
| C4H08_RS13685 (C4H08_13660) | crcB | 2792278..2792664 (-) | 387 | WP_003818609.1 | fluoride efflux transporter CrcB | - |
| C4H08_RS13690 (C4H08_13665) | - | 2792674..2793234 (-) | 561 | WP_003818608.1 | HdeD family acid-resistance protein | - |
| C4H08_RS13695 (C4H08_13670) | - | 2793323..2794108 (-) | 786 | WP_003818606.1 | ABC transporter permease | - |
| C4H08_RS13700 (C4H08_13675) | - | 2794105..2795052 (-) | 948 | WP_004568579.1 | ATP-binding cassette domain-containing protein | - |
| C4H08_RS13705 (C4H08_13680) | - | 2795199..2795828 (+) | 630 | WP_003810476.1 | PepSY-associated TM helix domain-containing protein | - |
| C4H08_RS13710 (C4H08_13685) | - | 2795851..2796366 (+) | 516 | WP_010930254.1 | DUF2271 domain-containing protein | - |
| C4H08_RS13715 (C4H08_13690) | - | 2796396..2797196 (+) | 801 | WP_014905623.1 | DUF4198 domain-containing protein | - |
| C4H08_RS13720 (C4H08_13695) | - | 2797201..2798217 (+) | 1017 | WP_010930252.1 | FAD:protein FMN transferase | - |
| C4H08_RS13725 (C4H08_13700) | - | 2798217..2798459 (+) | 243 | WP_261341273.1 | hypothetical protein | - |
| C4H08_RS13730 (C4H08_13705) | - | 2798439..2799389 (-) | 951 | WP_005012067.1 | IS481-like element IS481 family transposase | - |
| C4H08_RS13735 (C4H08_13710) | - | 2799479..2800645 (+) | 1167 | Protein_2690 | sulfite reductase subunit alpha | - |
| C4H08_RS13740 (C4H08_13715) | - | 2800661..2801617 (-) | 957 | WP_010930250.1 | tripartite tricarboxylate transporter substrate binding protein BugE | - |
| C4H08_RS13745 (C4H08_13720) | - | 2801668..2803110 (-) | 1443 | WP_010930249.1 | N-acyl-D-glutamate deacylase | - |
| C4H08_RS13750 (C4H08_13725) | - | 2803215..2804177 (+) | 963 | WP_010930248.1 | LysR family transcriptional regulator | - |
| C4H08_RS13755 (C4H08_13730) | - | 2804185..2804637 (-) | 453 | WP_010930247.1 | SRPBCC family protein | - |
| C4H08_RS13760 (C4H08_13735) | - | 2804705..2805535 (-) | 831 | WP_010930246.1 | phosphoenolpyruvate hydrolase family protein | - |
| C4H08_RS13765 (C4H08_13740) | - | 2805545..2806753 (-) | 1209 | WP_010930245.1 | Tm-1-like ATP-binding domain-containing protein | - |
| C4H08_RS13770 (C4H08_13745) | - | 2806911..2807606 (+) | 696 | WP_010930244.1 | TetR family transcriptional regulator | - |
| C4H08_RS13775 (C4H08_13750) | tcfA | 2807703..2809646 (-) | 1944 | WP_010930243.1 | autotransporter TcfA | - |
| C4H08_RS13780 (C4H08_13755) | - | 2810030..2811523 (-) | 1494 | Protein_2699 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| C4H08_RS13785 (C4H08_13760) | - | 2811517..2812467 (-) | 951 | WP_005012067.1 | IS481-like element IS481 family transposase | - |
| C4H08_RS13790 (C4H08_13765) | - | 2812570..2812908 (-) | 339 | Protein_2701 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| C4H08_RS13795 (C4H08_13770) | clpB | 2813224..2815821 (-) | 2598 | WP_010930242.1 | ATP-dependent chaperone ClpB | - |
| C4H08_RS13800 (C4H08_13775) | btr | 2816159..2816887 (+) | 729 | WP_010930241.1 | oxygen-responsive transcriptional regulator Btr | - |
| C4H08_RS13805 (C4H08_13780) | - | 2816884..2818038 (+) | 1155 | WP_010930240.1 | hypothetical protein | - |
| C4H08_RS13810 (C4H08_13785) | - | 2818072..2818413 (-) | 342 | WP_003818584.1 | 2Fe-2S iron-sulfur cluster-binding protein | - |
| C4H08_RS13815 (C4H08_13790) | - | 2818410..2819027 (-) | 618 | WP_010930239.1 | NUDIX domain-containing protein | - |
| C4H08_RS13820 (C4H08_13795) | - | 2819077..2819295 (-) | 219 | WP_003810443.1 | DUF3820 family protein | - |
| C4H08_RS13825 (C4H08_13800) | - | 2819320..2819646 (-) | 327 | WP_003818581.1 | hypothetical protein | - |
| C4H08_RS13830 (C4H08_13805) | - | 2819791..2820696 (-) | 906 | WP_003818580.1 | sigma-70 family RNA polymerase sigma factor | - |
| C4H08_RS13835 (C4H08_13810) | - | 2820689..2821135 (-) | 447 | WP_003810437.1 | carboxymuconolactone decarboxylase family protein | - |
| C4H08_RS13840 (C4H08_13815) | - | 2821363..2821791 (+) | 429 | WP_003818579.1 | copper resistance protein NlpE | - |
| C4H08_RS13845 (C4H08_13820) | - | 2821799..2822017 (-) | 219 | WP_010930238.1 | oxidoreductase-like domain-containing protein | - |
| C4H08_RS13850 (C4H08_13825) | - | 2822029..2822913 (-) | 885 | WP_010930237.1 | hypothetical protein | - |
| C4H08_RS13855 (C4H08_13830) | - | 2823070..2823264 (-) | 195 | WP_019247642.1 | hypothetical protein | - |
| C4H08_RS13860 (C4H08_13835) | - | 2823550..2824230 (+) | 681 | WP_010930236.1 | RraA family protein | - |
| C4H08_RS13865 (C4H08_13840) | - | 2824227..2825429 (+) | 1203 | WP_010930235.1 | aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme | - |
| C4H08_RS13870 (C4H08_13845) | - | 2825592..2826308 (+) | 717 | WP_010928212.1 | ABC transporter substrate-binding protein | - |
| C4H08_RS13875 (C4H08_13850) | - | 2826412..2827101 (+) | 690 | WP_003810422.1 | amino acid ABC transporter permease | - |
| C4H08_RS13880 (C4H08_13855) | - | 2827094..2827783 (+) | 690 | WP_003810420.1 | amino acid ABC transporter permease | - |
| C4H08_RS13885 (C4H08_13860) | - | 2827803..2828540 (+) | 738 | WP_010930234.1 | amino acid ABC transporter ATP-binding protein | - |
| C4H08_RS13890 (C4H08_13865) | - | 2828653..2829588 (+) | 936 | WP_010930233.1 | LysR family transcriptional regulator | - |
| C4H08_RS20435 | - | 2829649..2829813 (+) | 165 | WP_019247643.1 | hypothetical protein | - |
| C4H08_RS13895 (C4H08_13870) | - | 2829934..2830797 (+) | 864 | WP_010930232.1 | DMT family transporter | - |
| C4H08_RS13900 (C4H08_13875) | - | 2830863..2831813 (-) | 951 | WP_023853639.1 | IS481-like element IS481 family transposase | - |
| C4H08_RS13905 (C4H08_13880) | - | 2831912..2832862 (-) | 951 | WP_076879566.1 | IS481-like element IS481 family transposase | - |
| C4H08_RS13910 | - | 2832880..2833068 (+) | 189 | WP_023852977.1 | hypothetical protein | - |
| C4H08_RS13915 (C4H08_13885) | - | 2833065..2834054 (+) | 990 | WP_010930231.1 | M14 family metallopeptidase | - |
| C4H08_RS13920 (C4H08_13890) | - | 2834138..2834491 (+) | 354 | WP_010930230.1 | YgiW/YdeI family stress tolerance OB fold protein | - |
Sequence
Protein
Download Length: 453 a.a. Molecular weight: 47935.07 Da Isoelectric Point: 7.1753
>NTDB_id=271351 C4H08_RS13635 WP_010930258.1 2781491..2782852(-) (radA) [Bordetella pertussis strain J379]
MAKSRTIYVCAECGGTSLKWQGKCPHCSAWNTLEETVESAAPSAGGHRYAPLAAASPVRSLSEIEARETPRQPTGLDEFD
RVLGGGLVAGAVVLIGGDPGIGKSTLLLQALASLSATTKVLYVTGEESAEQVALRARRLGLQTGNVDLLAEIRLEAIQAA
VSEQKPTVAVIDSIQTLYSGELTAAPGSVSQVRECAAQLTRLAKQTGIAIVMIGHVTKDGALAGPRVLEHIVDTVLYFEG
DTHSSFRLVRAFKNRFGAVNELGVFAMTDRGLRGVANPSALFLSQHQQQVAGSCVLATQEGTRPLLVEVQALVDTSHAPN
PRRLTVGLEGNRLAMLLAVMHRHAGVSTYDQDVFVNAVGGVRITEPAADLPVLLAIMSSLRDKPLPAGLVAFGEIGLAGE
IRPAPRGQERLREAAKLGFSVALIPKANAPRQPIEGLEIWAVDRLDAALDKLR
MAKSRTIYVCAECGGTSLKWQGKCPHCSAWNTLEETVESAAPSAGGHRYAPLAAASPVRSLSEIEARETPRQPTGLDEFD
RVLGGGLVAGAVVLIGGDPGIGKSTLLLQALASLSATTKVLYVTGEESAEQVALRARRLGLQTGNVDLLAEIRLEAIQAA
VSEQKPTVAVIDSIQTLYSGELTAAPGSVSQVRECAAQLTRLAKQTGIAIVMIGHVTKDGALAGPRVLEHIVDTVLYFEG
DTHSSFRLVRAFKNRFGAVNELGVFAMTDRGLRGVANPSALFLSQHQQQVAGSCVLATQEGTRPLLVEVQALVDTSHAPN
PRRLTVGLEGNRLAMLLAVMHRHAGVSTYDQDVFVNAVGGVRITEPAADLPVLLAIMSSLRDKPLPAGLVAFGEIGLAGE
IRPAPRGQERLREAAKLGFSVALIPKANAPRQPIEGLEIWAVDRLDAALDKLR
Nucleotide
Download Length: 1362 bp
>NTDB_id=271351 C4H08_RS13635 WP_010930258.1 2781491..2782852(-) (radA) [Bordetella pertussis strain J379]
ATGGCGAAATCCCGAACCATCTATGTCTGCGCCGAATGCGGCGGCACCAGCCTCAAGTGGCAAGGCAAGTGCCCGCACTG
CTCGGCCTGGAATACCCTGGAAGAAACCGTGGAGTCCGCCGCGCCCTCGGCCGGCGGGCATCGCTACGCGCCCCTGGCGG
CAGCCAGCCCGGTGCGCAGCTTGTCCGAAATCGAAGCGCGCGAGACGCCGCGCCAGCCCACCGGACTGGACGAGTTCGAC
CGCGTGCTGGGCGGCGGGCTGGTCGCCGGCGCGGTGGTGCTGATCGGCGGCGACCCCGGCATCGGCAAGTCCACGCTGCT
GCTGCAGGCGCTGGCCTCGCTGTCGGCCACGACCAAGGTGTTGTACGTCACCGGTGAAGAGTCGGCCGAACAGGTCGCGC
TGCGGGCGCGCCGGCTGGGCCTGCAGACCGGCAATGTCGACTTGCTGGCCGAGATCCGGCTCGAGGCGATCCAGGCGGCC
GTGTCCGAACAGAAGCCGACCGTGGCGGTGATCGATTCGATCCAGACGCTCTACAGCGGCGAGCTGACCGCCGCGCCGGG
CTCGGTGTCCCAGGTGCGCGAATGCGCGGCGCAGCTGACGCGGCTGGCCAAGCAGACCGGCATCGCCATCGTGATGATCG
GCCACGTCACCAAGGACGGCGCGCTGGCCGGACCGCGCGTGCTCGAACACATCGTCGACACGGTGCTGTACTTCGAGGGC
GACACGCATTCGTCGTTTCGCCTGGTGCGCGCGTTCAAGAACCGCTTCGGCGCCGTCAACGAGCTGGGCGTGTTCGCCAT
GACCGACCGCGGCCTGCGCGGCGTGGCCAATCCGTCCGCGCTGTTTCTCTCGCAGCACCAGCAGCAGGTGGCCGGTTCCT
GCGTGCTGGCGACCCAGGAAGGGACGCGCCCGCTGCTGGTGGAAGTGCAGGCGCTCGTCGATACTTCGCATGCGCCCAAT
CCGCGCCGCCTGACGGTGGGGCTGGAGGGTAATCGCCTGGCCATGCTGCTGGCCGTCATGCACCGCCATGCGGGCGTCTC
GACCTACGACCAGGACGTATTCGTCAATGCCGTGGGCGGGGTGCGCATCACCGAGCCGGCGGCCGACCTGCCGGTACTGC
TGGCCATCATGTCATCGCTGCGCGACAAGCCGCTGCCCGCCGGCCTGGTGGCGTTCGGCGAGATCGGCCTGGCCGGCGAG
ATCCGGCCCGCGCCGCGCGGCCAGGAGCGCCTGCGCGAAGCGGCCAAGCTGGGGTTCAGCGTTGCGCTGATTCCCAAGGC
CAATGCGCCGCGCCAGCCTATCGAAGGGCTGGAGATATGGGCCGTGGATCGGCTGGACGCCGCCCTGGACAAATTGCGTT
GA
ATGGCGAAATCCCGAACCATCTATGTCTGCGCCGAATGCGGCGGCACCAGCCTCAAGTGGCAAGGCAAGTGCCCGCACTG
CTCGGCCTGGAATACCCTGGAAGAAACCGTGGAGTCCGCCGCGCCCTCGGCCGGCGGGCATCGCTACGCGCCCCTGGCGG
CAGCCAGCCCGGTGCGCAGCTTGTCCGAAATCGAAGCGCGCGAGACGCCGCGCCAGCCCACCGGACTGGACGAGTTCGAC
CGCGTGCTGGGCGGCGGGCTGGTCGCCGGCGCGGTGGTGCTGATCGGCGGCGACCCCGGCATCGGCAAGTCCACGCTGCT
GCTGCAGGCGCTGGCCTCGCTGTCGGCCACGACCAAGGTGTTGTACGTCACCGGTGAAGAGTCGGCCGAACAGGTCGCGC
TGCGGGCGCGCCGGCTGGGCCTGCAGACCGGCAATGTCGACTTGCTGGCCGAGATCCGGCTCGAGGCGATCCAGGCGGCC
GTGTCCGAACAGAAGCCGACCGTGGCGGTGATCGATTCGATCCAGACGCTCTACAGCGGCGAGCTGACCGCCGCGCCGGG
CTCGGTGTCCCAGGTGCGCGAATGCGCGGCGCAGCTGACGCGGCTGGCCAAGCAGACCGGCATCGCCATCGTGATGATCG
GCCACGTCACCAAGGACGGCGCGCTGGCCGGACCGCGCGTGCTCGAACACATCGTCGACACGGTGCTGTACTTCGAGGGC
GACACGCATTCGTCGTTTCGCCTGGTGCGCGCGTTCAAGAACCGCTTCGGCGCCGTCAACGAGCTGGGCGTGTTCGCCAT
GACCGACCGCGGCCTGCGCGGCGTGGCCAATCCGTCCGCGCTGTTTCTCTCGCAGCACCAGCAGCAGGTGGCCGGTTCCT
GCGTGCTGGCGACCCAGGAAGGGACGCGCCCGCTGCTGGTGGAAGTGCAGGCGCTCGTCGATACTTCGCATGCGCCCAAT
CCGCGCCGCCTGACGGTGGGGCTGGAGGGTAATCGCCTGGCCATGCTGCTGGCCGTCATGCACCGCCATGCGGGCGTCTC
GACCTACGACCAGGACGTATTCGTCAATGCCGTGGGCGGGGTGCGCATCACCGAGCCGGCGGCCGACCTGCCGGTACTGC
TGGCCATCATGTCATCGCTGCGCGACAAGCCGCTGCCCGCCGGCCTGGTGGCGTTCGGCGAGATCGGCCTGGCCGGCGAG
ATCCGGCCCGCGCCGCGCGGCCAGGAGCGCCTGCGCGAAGCGGCCAAGCTGGGGTTCAGCGTTGCGCTGATTCCCAAGGC
CAATGCGCCGCGCCAGCCTATCGAAGGGCTGGAGATATGGGCCGTGGATCGGCTGGACGCCGCCCTGGACAAATTGCGTT
GA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radA | Bacillus subtilis subsp. subtilis str. 168 |
48.904 |
100 |
0.492 |
| radA | Streptococcus mitis NCTC 12261 |
46.07 |
100 |
0.466 |
| radA | Streptococcus pneumoniae D39 |
48.26 |
95.143 |
0.459 |
| radA | Streptococcus pneumoniae TIGR4 |
48.26 |
95.143 |
0.459 |
| radA | Streptococcus mitis SK321 |
48.26 |
95.143 |
0.459 |
| radA | Streptococcus pneumoniae R6 |
48.26 |
95.143 |
0.459 |
| radA | Streptococcus pneumoniae Rx1 |
48.26 |
95.143 |
0.459 |