Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   D0819_RS19270 Genome accession   NZ_CP031784
Coordinates   3718790..3719224 (+) Length   144 a.a.
NCBI ID   WP_031315644.1    Uniprot ID   -
Organism   Bacillus subtilis strain HMNig-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3713790..3724224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0819_RS19240 (D0819_19320) ydaD 3714440..3715300 (+) 861 WP_003234401.1 SDR family oxidoreductase -
  D0819_RS19245 (D0819_19325) lyxE 3715316..3715819 (+) 504 WP_021481729.1 D-lyxose ketol-isomerase -
  D0819_RS19250 (D0819_19330) ydaF 3715905..3716456 (+) 552 WP_021481728.1 GNAT family protein -
  D0819_RS19255 (D0819_19335) ydaG 3716534..3716956 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  D0819_RS19260 (D0819_19340) amj 3717462..3718271 (+) 810 WP_015715258.1 lipid II flippase Amj -
  D0819_RS19265 (D0819_19345) ydzA 3718315..3718605 (-) 291 WP_003246602.1 DUF3817 domain-containing protein -
  D0819_RS19270 (D0819_19350) lrpC 3718790..3719224 (+) 435 WP_031315644.1 transcriptional regulator LrpC Machinery gene
  D0819_RS19275 (D0819_19355) topB 3719289..3721472 (+) 2184 WP_153257256.1 DNA topoisomerase III -
  D0819_RS19280 (D0819_19360) ephJ 3721675..3722763 (+) 1089 WP_049141400.1 lipoprotein YdaJ -
  D0819_RS19285 (D0819_19365) epsK 3722744..3723595 (+) 852 WP_153257257.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16462.08 Da        Isoelectric Point: 7.7037

>NTDB_id=271346 D0819_RS19270 WP_031315644.1 3718790..3719224(+) (lrpC) [Bacillus subtilis strain HMNig-2]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQILPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=271346 D0819_RS19270 WP_031315644.1 3718790..3719224(+) (lrpC) [Bacillus subtilis strain HMNig-2]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGTATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAATATTGCCGAATATTGAATTTTGCTACCGGATTGCAGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

99.306

100

0.993