Detailed information
Bioinformatically predicted
Overview
| Name | sxy/tfoX | Type | Regulator |
| Locus tag | C4M53_RS05210 | Genome accession | NZ_CP026660 |
| Coordinates | 1066849..1067454 (+) | Length | 201 a.a. |
| NCBI ID | WP_001202375.1 | Uniprot ID | A0A5I0N148 |
| Organism | Salmonella enterica subsp. enterica strain 15-SA01028 | ||
| Function | positive regulator of competence gene (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1033248..1075714 | 1066849..1067454 | within | 0 |
Gene organization within MGE regions
Location: 1033248..1075714
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C4M53_RS05070 (C4M53_05070) | ldtD | 1033288..1035135 (+) | 1848 | WP_000925896.1 | L,D-transpeptidase | - |
| C4M53_RS05080 (C4M53_05080) | - | 1035395..1035943 (+) | 549 | WP_000357052.1 | YcbK family protein | - |
| C4M53_RS05085 (C4M53_05085) | - | 1035971..1036618 (+) | 648 | WP_001109471.1 | MBL fold metallo-hydrolase | - |
| C4M53_RS05090 (C4M53_05090) | - | 1036716..1037971 (+) | 1256 | WP_086016038.1 | IS3-like element ISSen1 family transposase | - |
| C4M53_RS05095 (C4M53_05095) | aspC | 1037995..1039185 (-) | 1191 | WP_000462653.1 | aspartate transaminase | - |
| C4M53_RS05100 (C4M53_05100) | ompF | 1039370..1040461 (-) | 1092 | WP_000977709.1 | porin OmpF | - |
| C4M53_RS05105 (C4M53_05105) | asnS | 1041068..1042468 (-) | 1401 | WP_023993514.1 | asparagine--tRNA ligase | - |
| C4M53_RS05110 (C4M53_05110) | - | 1042669..1043130 (-) | 462 | WP_000762342.1 | Lrp/AsnC family transcriptional regulator | - |
| C4M53_RS05120 (C4M53_05120) | dpaL | 1043447..1044661 (+) | 1215 | WP_020438006.1 | diaminopropionate ammonia-lyase | - |
| C4M53_RS05125 (C4M53_05125) | - | 1044907..1046340 (+) | 1434 | WP_085429164.1 | alanine/glycine:cation symporter family protein | - |
| C4M53_RS05130 (C4M53_05130) | pncB | 1046421..1047623 (-) | 1203 | WP_023993513.1 | nicotinate phosphoribosyltransferase | - |
| C4M53_RS05135 (C4M53_05135) | pepN | 1047890..1050502 (+) | 2613 | WP_023993512.1 | aminopeptidase N | - |
| C4M53_RS05140 (C4M53_05140) | pyrD | 1050710..1051720 (+) | 1011 | WP_000291723.1 | quinone-dependent dihydroorotate dehydrogenase | - |
| C4M53_RS05145 (C4M53_05145) | zapC | 1051886..1052428 (+) | 543 | WP_001220671.1 | cell division protein ZapC | - |
| C4M53_RS05150 (C4M53_05150) | - | 1052425..1053534 (-) | 1110 | WP_023993510.1 | YcbX family protein | - |
| C4M53_RS05155 (C4M53_05155) | rlmKL | 1053633..1055741 (+) | 2109 | WP_023993509.1 | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | - |
| C4M53_RS05160 (C4M53_05160) | - | 1055754..1057661 (+) | 1908 | WP_023993508.1 | ABC transporter ATP-binding protein | - |
| C4M53_RS05165 (C4M53_05165) | pqiA | 1057676..1058929 (+) | 1254 | WP_000333152.1 | membrane integrity-associated transporter subunit PqiA | - |
| C4M53_RS05170 (C4M53_05170) | pqiB | 1058934..1060574 (+) | 1641 | WP_000433414.1 | intermembrane transport protein PqiB | - |
| C4M53_RS05175 (C4M53_05175) | pqiC | 1060571..1061134 (+) | 564 | WP_000759136.1 | membrane integrity-associated transporter subunit PqiC | - |
| C4M53_RS05180 (C4M53_05180) | rmf | 1061390..1061557 (+) | 168 | WP_001537784.1 | ribosome modulation factor | - |
| C4M53_RS05185 (C4M53_05185) | fabA | 1061657..1062175 (-) | 519 | WP_000227928.1 | bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase | - |
| C4M53_RS05190 (C4M53_05190) | - | 1062244..1064004 (-) | 1761 | WP_000156457.1 | AAA family ATPase | - |
| C4M53_RS05195 (C4M53_05195) | matP | 1064190..1064642 (+) | 453 | WP_000877172.1 | macrodomain Ter protein MatP | - |
| C4M53_RS05200 (C4M53_05200) | ompA | 1064714..1065766 (-) | 1053 | WP_001670727.1 | porin OmpA | - |
| C4M53_RS05205 (C4M53_05205) | sulA | 1066123..1066632 (-) | 510 | WP_000288732.1 | SOS-induced cell division inhibitor SulA | - |
| C4M53_RS05210 (C4M53_05210) | sxy/tfoX | 1066849..1067454 (+) | 606 | WP_001202375.1 | TfoX/Sxy family DNA transformation protein | Regulator |
| C4M53_RS05215 (C4M53_05215) | yccS | 1067441..1069594 (-) | 2154 | WP_000950876.1 | YccS family putative transporter | - |
| C4M53_RS05220 (C4M53_05220) | - | 1069613..1070059 (-) | 447 | WP_023993507.1 | YccF domain-containing protein | - |
| C4M53_RS05225 (C4M53_05225) | helD | 1070183..1072237 (+) | 2055 | WP_023993506.1 | DNA helicase IV | - |
| C4M53_RS05230 (C4M53_05230) | mgsA | 1072273..1072731 (-) | 459 | WP_023993505.1 | methylglyoxal synthase | - |
| C4M53_RS05235 (C4M53_05235) | - | 1072826..1073488 (-) | 663 | WP_000847719.1 | DUF2057 family protein | - |
| C4M53_RS05240 (C4M53_05240) | - | 1073662..1074075 (+) | 414 | WP_001537782.1 | CoA-binding protein | - |
| C4M53_RS05245 (C4M53_05245) | hspQ | 1074120..1074437 (-) | 318 | WP_000561983.1 | heat shock protein HspQ | - |
| C4M53_RS05250 (C4M53_05250) | rlmI | 1074495..1075706 (-) | 1212 | WP_000140480.1 | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | - |
Sequence
Protein
Download Length: 201 a.a. Molecular weight: 23174.94 Da Isoelectric Point: 8.7403
>NTDB_id=271295 C4M53_RS05210 WP_001202375.1 1066849..1067454(+) (sxy/tfoX) [Salmonella enterica subsp. enterica strain 15-SA01028]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG
Nucleotide
Download Length: 606 bp
>NTDB_id=271295 C4M53_RS05210 WP_001202375.1 1066849..1067454(+) (sxy/tfoX) [Salmonella enterica subsp. enterica strain 15-SA01028]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sxy/tfoX | Escherichia coli BW25113 strain K-12 |
75.879 |
99.005 |
0.751 |